def folderitem(self, obj, item, index):
item = super(QCAnalysesView, self).folderitem(obj, item, index)
obj = self.get_object(obj)
# Fill Worksheet cell
worksheet = obj.getWorksheet()
if not worksheet:
return item
# Fill the Worksheet cell
ws_id = api.get_id(worksheet)
ws_url = api.get_url(worksheet)
item["replace"]["Worksheet"] = get_link(ws_url, value=ws_id)
if IDuplicateAnalysis.providedBy(obj):
an_type = "d"
img_name = "duplicate.png"
parent = obj.getRequest()
else:
an_type = obj.getReferenceType()
img_name = an_type == "c" and "control.png" or "blank.png"
parent = obj.aq_parent
# Render the image
an_type = QCANALYSIS_TYPES.getValue(an_type)
item['before']['Service'] = get_image(img_name, title=an_type)
# Fill the Parent cell
parent_url = api.get_url(parent)
parent_id = api.get_id(parent)
item["replace"]["Parent"] = get_link(parent_url, value=parent_id)
return item
def remove_analysis(self, analysis):
"""Removes a given analysis from the instance
"""
# Remember assigned attachments
# https://github.com/senaite/senaite.core/issues/1025
attachments = analysis.getAttachment()
analysis.setAttachment([])
# If assigned to a worksheet, unassign it before deletion
worksheet = analysis.getWorksheet()
if worksheet:
worksheet.removeAnalysis(analysis)
# Remove the analysis
# Note the analysis might belong to a partition
analysis.aq_parent.manage_delObjects(ids=[api.get_id(analysis)])
# Remove orphaned attachments
for attachment in attachments:
if not attachment.getLinkedAnalyses():
# only delete attachments which are no further linked
logger.info("Deleting attachment: {}".format(
attachment.getId()))
attachment_id = api.get_id(attachment)
api.get_parent(attachment).manage_delObjects(attachment_id)
def get_rejection_mail(sample, rejection_pdf=None):
"""Generates an email to sample contacts with rejection reasons
"""
# Get the reasons
reasons = sample.getRejectionReasons()
reasons = reasons and reasons[0] or {}
reasons = reasons.get("selected", []) + [reasons.get("other")]
reasons = filter(None, reasons)
reasons = "<br/>- ".join(reasons)
# Render the email body
setup = api.get_setup()
lab_address = setup.laboratory.getPrintAddress()
email_body = Template(setup.getEmailBodySampleRejection())
email_body = email_body.safe_substitute({
"lab_address":
"<br/>".join(lab_address),
"reasons":
reasons and "<br/>-{}".format(reasons) or "",
"sample_id":
api.get_id(sample),
"sample_link":
get_link(api.get_url(sample), api.get_id(sample))
})
def to_valid_email_address(contact):
if not contact:
return None
address = contact.getEmailAddress()
if not is_valid_email_address(address):
return None
return address
# Get the recipients
_to = [sample.getContact()] + sample.getCCContact()
_to = map(to_valid_email_address, _to)
_to = filter(None, _to)
if not _to:
# Cannot send an e-mail without recipient!
logger.warn("No valid recipients for {}".format(api.get_id(sample)))
return None
lab = api.get_setup().laboratory
attachments = rejection_pdf and [rejection_pdf] or []
return compose_email(from_addr=lab.getEmailAddress(),
to_addr=_to,
subj=_("%s has been rejected") % api.get_id(sample),
body=email_body,
attachments=attachments)
def get_email_body(self, sample):
"""Returns the email body text
"""
retest = sample.getRetest()
lab_address = api.get_bika_setup().laboratory.getPrintAddress()
setup = api.get_setup()
body = Template(setup.getEmailBodySampleInvalidation())\
.safe_substitute(
dict(sample_link=self.get_html_link(sample),
retest_link=self.get_html_link(retest),
sample_id=api.get_id(sample),
retest_id=api.get_id(retest),
lab_address="<br/>".join(lab_address)))
return body
def __call__(self):
form = self.request.form
# Form submit toggle
form_submitted = form.get("submitted", False)
form_store = form.get("button_store", False)
form_cancel = form.get("button_cancel", False)
# Get the container
container = self.get_container()
if not container:
return self.redirect(message=_s("No items selected"),
level="warning")
if not IStorageSamplesContainer.providedBy(container):
logger.warn("Not a samples container: {}").format(repr(container))
self.redirect(redirect_url=self.get_next_url())
# If container is full, there is no way to add more samples there
if container.is_full():
message = _("Cannot store samples. Samples container {} is full")
return self.redirect(message=message.format(api.get_id(container)),
level="warning")
# Handle store
if form_submitted and form_store:
alpha_position = form.get("position")
sample_uid = form.get("sample_uid")
if not alpha_position or not api.is_uid(sample_uid):
message = _("No position or not valid sample selected")
return self.redirect(message=message)
sample = api.get_object(sample_uid)
logger.info("Storing sample {} in {} at {}".format(
api.get_id(sample), api.get_id(container), alpha_position))
# Store
position = container.alpha_to_position(alpha_position)
if container.add_object_at(sample, position[0], position[1]):
message = _("Stored sample {} at position {}").format(
api.get_id(sample), alpha_position)
if container.is_full():
return self.redirect(redirect_url=self.get_next_url())
return self.redirect(redirect_url=self.get_fallback_url(),
message=message)
# Handle cancel
if form_submitted and form_cancel:
return self.redirect(message=_("Sample storing canceled"))
return self.template()
def get_object_info(self):
object_info = self.get_base_info()
# Default values for other fields when the Batch is selected
doctor = self.context.getField("Doctor").get(self.context)
client = self.context.getClient()
field_values = {
"Doctor": self.to_field_value(doctor),
"Client": self.to_field_value(client),
}
patient = self.context.getField("Patient").get(self.context)
if patient:
field_values.update({
"Patient": self.to_field_value(patient),
"ClientPatientID": {
"uid": api.get_uid(patient),
"title": patient.getClientPatientID() or api.get_id(patient),
}
})
# Allow to choose Patients from same Client only and apply
# generic filters when a client is selected too
filter_queries = {}
if client:
query = {"query": api.get_path(client), "depth": 1}
filter_queries = {
"Patient": {"path": query},
"ClientPatientID": {"path": query},
}
object_info["field_values"] = field_values
object_info["filter_queries"] = filter_queries
return object_info
def search_by_prefix(portal_type, prefix):
"""Returns brains which share the same portal_type and ID prefix
"""
# Get all brains for all catalogs for given portal type
brains = search_catalogs(portal_type)
# Filter brains with the same ID prefix
return filter(lambda brain: api.get_id(brain).startswith(prefix), brains)
def get_sample_container_info(self):
"""Returns the storage container this Sample is stored in
"""
# Search the container the sample is stored in
query = {
"portal_type": "StorageSamplesContainer",
"get_samples_uids": api.get_uid(self.context)
}
brains = api.search(query, SENAITE_STORAGE_CATALOG)
if not brains:
return None
# Get the data info from the container
container = api.get_object(brains[0])
position = container.get_object_position(self.context)
position = container.position_to_alpha(position[0], position[1])
return {
"uid": api.get_uid(container),
"id": api.get_id(container),
"title": api.get_title(container),
"url": api.get_url(container),
"position": position,
"full_title": container.get_full_title(),
"when": wf.getTransitionDate(self.context, "store"),
}
def resolve_client_for_doctor(doctor):
# If the doctor has a client assigned already, return it directly. We
# consider that a patient with a client assigned this way has been processed
# already or does not require any further checks
client = doctor.getClient()
if client:
return client
# Try to infer the client from Samples or Batches
batches = doctor.getBatches(full_objects=True)
client_uids = map(lambda b: b.getClientUID(), batches)
client_uids.extend(map(lambda s: s.getClientUID, doctor.getSamples()))
client_uids = filter(None, list(set(client_uids)))
if not client_uids:
# This Doctor has no batch/sample assigned
return None
clients = map(api.get_object_by_uid, client_uids)
internals = map(is_internal_client, clients)
if all(internals):
# All clients are internal, return the first one
return clients[0]
else:
# OOps, we have a problem here. This Doctor is assigned to samples and
# batches that belong to different types of client!
logger.error(
"Doctor {} is assigned to clients from different types".format(
api.get_id(doctor), repr(clients)))
return None
def folderitem(self, obj, item, index):
item = super(InstrumentReferenceAnalysesView,
self).folderitem(obj, item, index)
analysis = api.get_object(obj)
# Partition is used to group/toggle QC Analyses
sample = analysis.getSample()
item["replace"]["Partition"] = get_link(api.get_url(sample),
api.get_id(sample))
# Get retractions field
item["Retractions"] = ""
report = analysis.getRetractedAnalysesPdfReport()
if report:
url = api.get_url(analysis)
href = "{}/at_download/RetractedAnalysesPdfReport".format(url)
attrs = {"class": "pdf", "target": "_blank"}
title = _("Retractions")
link = get_link(href, title, **attrs)
item["Retractions"] = title
item["replace"]["Retractions"] = link
# Add the analysis to the QC Chart
self.chart.add_analysis(analysis)
return item
def send_panic_email(self):
# Send an alert email
setup = api.get_setup()
laboratory = setup.laboratory
subject = self.request.get('subject')
to = self.request.get('to')
body = self.request.get('email_body')
body = "<br/>".join(body.split("\r\n"))
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = to
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = api.get_tool("MailHost")
host.send(mime_msg.as_string(), immediate=True)
except Exception, msg:
sample_id = api.get_id(self.sample)
logger.error("Panic level email %s: %s" % (sample_id, str(msg)))
message = _("Unable to send an email to alert client "
"that some results exceeded the panic levels")
message = "{}: {}".format(message, str(msg))
return self.redirect(self.back_url, message, "warning")
def getRequestID(self):
"""Return the ID of the linked AR
"""
ar = self.getRequest()
if not ar:
return ""
return api.get_id(ar)
def guard(self, action):
"""Returns False if the sample is queued or contains queued analyses
"""
# Check if this current request life-cycle is handled by a consumer
request = capi.get_request()
queue_task_uid = request.get("queue_tuid", "")
if capi.is_uid(queue_task_uid):
ctx_id = capi.get_id(self.context)
logger.info("Skip guard for {}: {}".format(ctx_id, action))
return True
# Don't do anything if senaite.queue is not enabled
if not api.is_queue_enabled():
return True
# Check if the sample is queued
if api.is_queued(self.context, status=["queued"]):
return False
# Check whether the sample contains queued analyses
for brain in self.context.getAnalyses():
if api.is_queued(brain, status=["queued"]):
return False
return True
def search_by_prefix(portal_type, prefix):
"""Returns brains which share the same portal_type and ID prefix
"""
catalog = api.get_tool("uid_catalog")
brains = catalog({"portal_type": portal_type})
# Filter brains with the same ID prefix
return filter(lambda brain: api.get_id(brain).startswith(prefix), brains)
def email_attachments(self):
attachments = []
# Convert report PDFs -> email attachments
for report in self.reports:
pdf = self.get_pdf(report)
if pdf is None:
logger.error("Skipping empty PDF for report {}"
.format(report.getId()))
continue
sample = report.getAnalysisRequest()
filename = "{}.pdf".format(api.get_id(sample))
filedata = pdf.data
attachments.append(
mailapi.to_email_attachment(filedata, filename))
# Convert additional attachments
for attachment in self.attachments:
af = attachment.getAttachmentFile()
filedata = af.data
filename = af.filename
attachments.append(
mailapi.to_email_attachment(filedata, filename))
return attachments
def search_by_prefix(portal_type, prefix):
"""Returns brains which share the same portal_type and ID prefix
"""
catalog = api.get_tool("portal_catalog")
brains = catalog({"portal_type": portal_type})
# Filter brains with the same ID prefix
return filter(lambda brain: api.get_id(brain).startswith(prefix), brains)
def do_rejection(sample, notify=None):
"""Rejects the sample and if succeeds, generates the rejection pdf and
sends a notification email. If notify is None, the notification email will
only be sent if the setting in Setup is enabled
"""
sample_id = api.get_id(sample)
if not sample.getRejectionReasons():
logger.warn("Cannot reject {} w/o rejection reasons".format(sample_id))
return
success, msg = doActionFor(sample, "reject")
if not success:
logger.warn("Cannot reject the sample {}".format(sample_id))
return
# Generate a pdf with the rejection reasons
pdf = get_rejection_pdf(sample)
# Attach the PDF to the sample
filename = "{}-rejected.pdf".format(sample_id)
sample.createAttachment(pdf, filename=filename)
# Do we need to send a notification email?
if notify is None:
setup = api.get_setup()
notify = setup.getNotifyOnSampleRejection()
if notify:
# Compose and send the email
mime_msg = get_rejection_mail(sample, pdf)
# Send the email
send_email(mime_msg)
def resolve_analyses(self, instance, service):
"""Resolves analyses for the service and instance
It returns a list, cause for a given sample, multiple analyses for same
service can exist due to the possibility of having multiple partitions
"""
analyses = []
# Does the analysis exists in this instance already?
instance_analyses = self.get_from_instance(instance, service)
if instance_analyses:
analyses.extend(instance_analyses)
# Does the analysis exists in an ancestor?
from_ancestor = self.get_from_ancestor(instance, service)
for ancestor_analysis in from_ancestor:
# Move the analysis into this instance. The ancestor's
# analysis will be masked otherwise
analysis_id = api.get_id(ancestor_analysis)
logger.info("Analysis {} is from an ancestor".format(analysis_id))
cp = ancestor_analysis.aq_parent.manage_cutObjects(analysis_id)
instance.manage_pasteObjects(cp)
analyses.append(instance._getOb(analysis_id))
# Does the analysis exists in descendants?
from_descendant = self.get_from_descendant(instance, service)
analyses.extend(from_descendant)
return analyses
def create_report(self, parent, pdf, html, uids, metadata):
"""Create a new report object
NOTE: We limit the creation of reports to 1 to avoid conflict errors on
simultaneous publication.
:param parent: parent object where to create the report inside
:returns: ARReport
"""
parent_id = api.get_id(parent)
logger.info("Create Report for {} ...".format(parent_id))
# Manually update the view on the database to avoid conflict errors
parent._p_jar.sync()
# Create the report object
report = api.create(parent,
"ARReport",
AnalysisRequest=api.get_uid(parent),
Pdf=pdf,
Html=html,
ContainedAnalysisRequests=uids,
Metadata=metadata)
# Commit the changes
transaction.commit()
logger.info("Create Report for {} [DONE]".format(parent_id))
return report
def get_title_or_id_from_uid(uid):
"""Returns the title or ID from the given UID
"""
obj = api.get_object_by_uid(uid, default=None)
if obj is None:
return ""
title_or_id = api.get_title(obj) or api.get_id(obj)
return title_or_id
def after_retract(analysis):
"""Function triggered after a 'retract' transition for the analysis passed
in is performed. The analysis transitions to "retracted" state and a new
copy of the analysis is created. The copy initial state is "unassigned",
unless the the retracted analysis was assigned to a worksheet. In such case,
the copy is transitioned to 'assigned' state too
"""
# Retract our dependents (analyses that depend on this analysis)
cascade_to_dependents(analysis, "retract")
# Retract our dependencies (analyses this analysis depends on)
promote_to_dependencies(analysis, "retract")
# Rename the analysis to make way for it's successor.
# Support multiple retractions by renaming to *-0, *-1, etc
parent = analysis.aq_parent
keyword = analysis.getKeyword()
# Get only those that are analyses and with same keyword as the original
analyses = parent.getAnalyses(full_objects=True)
analyses = filter(lambda an: an.getKeyword() == keyword, analyses)
# TODO This needs to get managed by Id server in a nearly future!
new_id = '{}-{}'.format(keyword, len(analyses))
# Create a copy of the retracted analysis
an_uid = api.get_uid(analysis)
new_analysis = create_analysis(parent,
analysis,
id=new_id,
RetestOf=an_uid)
new_analysis.setResult("")
new_analysis.setResultCaptureDate(None)
new_analysis.reindexObject()
logger.info("Retest for {} ({}) created: {}".format(
keyword, api.get_id(analysis), api.get_id(new_analysis)))
# Assign the new analysis to this same worksheet, if any.
worksheet = analysis.getWorksheet()
if worksheet:
worksheet.addAnalysis(new_analysis)
# Try to rollback the Analysis Request
if IRequestAnalysis.providedBy(analysis):
doActionFor(analysis.getRequest(), "rollback_to_receive")
reindex_request(analysis)
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
obj = api.get_object(obj)
# XXX Refactor expiration to a proper place
# ---------------------------- 8< -------------------------------------
if item.get("review_state", "current") == "current":
# Check expiry date
exdate = obj.getExpiryDate()
if exdate:
expirydate = DT2dt(exdate).replace(tzinfo=None)
if (datetime.today() > expirydate):
# Trigger expiration
self.workflow.doActionFor(obj, "expire")
item["review_state"] = "expired"
item["obj"] = obj
if self.contentFilter.get('review_state', '') \
and item.get('review_state', '') == 'expired':
# This item must be omitted from the list
return None
# ---------------------------- >8 -------------------------------------
url = api.get_url(obj)
id = api.get_id(obj)
item["ID"] = id
item["replace"]["ID"] = get_link(url, value=id)
item["DateSampled"] = self.ulocalized_time(
obj.getDateSampled(), long_format=True)
item["DateReceived"] = self.ulocalized_time(obj.getDateReceived())
item["DateOpened"] = self.ulocalized_time(obj.getDateOpened())
item["ExpiryDate"] = self.ulocalized_time(obj.getExpiryDate())
# Icons
after_icons = ''
if obj.getBlank():
after_icons += get_image(
"blank.png", title=t(_("Blank")))
if obj.getHazardous():
after_icons += get_image(
"hazardous.png", title=t(_("Hazardous")))
if after_icons:
item["after"]["ID"] = after_icons
return item
def _get_title_or_id_from_uid(uid):
"""Returns the title or ID from the given UID
"""
try:
obj = api.get_object_by_uid(uid)
except api.APIError:
return "<Deleted {}>".format(uid)
title_or_id = api.get_title(obj) or api.get_id(obj)
return title_or_id
def update_ast_analysis(analysis, antibiotics, remove=False):
# There is nothing to do if the analysis has been verified
analysis = api.get_object(analysis)
if IVerified.providedBy(analysis):
return
# Convert antibiotics to interim fields
keyword = analysis.getKeyword()
interim_fields = map(lambda ab: to_interim(keyword, ab), antibiotics)
# Get the analysis interim fields
an_interims = copy.deepcopy(analysis.getInterimFields()) or []
an_keys = sorted(map(lambda i: i.get("keyword"), an_interims))
# Remove non-specified antibiotics
if remove:
in_keys = map(lambda i: i.get("keyword"), interim_fields)
an_interims = filter(lambda a: a["keyword"] in in_keys, an_interims)
# Keep analysis' original antibiotics
abx = filter(lambda a: a["keyword"] not in an_keys, interim_fields)
an_interims.extend(abx)
# Is there any difference?
new_keys = sorted(map(lambda i: i.get("keyword"), an_interims))
if new_keys == an_keys:
# No changes
return
# If no antibiotics, remove the analysis
if remove and not an_interims:
sample = analysis.getRequest()
sample._delObject(api.get_id(analysis))
return
if ISubmitted.providedBy(analysis):
# Analysis has been submitted already, retract
succeed, message = wf.doActionFor(analysis, "retract")
if not succeed:
path = api.get_path(analysis)
logger.error("Cannot retract analysis '{}'".format(path))
return
# Assign the antibiotics
analysis.setInterimFields(an_interims)
# Compute all combinations of interim/antibiotic and possible result and
# and generate the result options for this analysis (the "Result" field is
# never displayed and is only used for reporting)
result_options = get_result_options(analysis)
analysis.setResultOptions(result_options)
# Apply the IASTAnalysis marker interface (just in case)
alsoProvides(analysis, IASTAnalysis)
analysis.reindexObject()
def get_base_info(self):
"""Returns the basic dictionary structure for the current object
"""
return {
"id": api.get_id(self.context),
"uid": api.get_uid(self.context),
"title": api.get_title(self.context),
"field_values": {},
"filter_queries": {},
}
def folderitem(self, obj, item, index):
obj = api.get_object(obj)
currency = currency_format(self.context, 'en')
item['replace']['id'] = get_link(item["url"], api.get_id(obj))
item['client'] = obj.getClient().Title()
item['invoicedate'] = self.ulocalized_time(obj.getInvoiceDate())
item['subtotal'] = currency(obj.getSubtotal())
item['vatamount'] = currency(obj.getVATAmount())
item['total'] = currency(obj.getTotal())
return item
def __call__(self):
# Create the invoice object and link it to the current AR.
pdf = self.create_pdf()
invoice = self.context.createInvoice(pdf)
self.add_status_message(
_("Invoice {} created").format(api.get_id(invoice)))
# Reload the page to see the the new fields
self.request.response.redirect("%s/invoice" %
self.aq_parent.absolute_url())
def fix_email_address(portal, portal_types=None, catalog_id="portal_catalog"):
"""Validates the email address of portal types that inherit from Person.
The field did not have an email validator, causing some views to fail when
rendering the value while expecting a valid email address format
"""
logger.info("Fixing email addresses ...")
if not portal_types:
portal_types = ["Contact", "LabContact", "SupplierContact"]
query = dict(portal_type=portal_types)
brains = api.search(query, catalog_id)
total = len(brains)
for num, brain in enumerate(brains):
if num and num % 1000 == 0:
logger.info("{}/{} Fixing email addresses ...".format(num, total))
obj = api.get_object(brain)
email_address = obj.getEmailAddress()
if not email_address:
continue
if not is_valid_email_address(email_address):
obj_id = api.get_id(obj)
logger.info("No valid email address for {}: {}"
.format(obj_id, email_address))
# Maybe is a list of email addresses
emails = map(lambda x: x.strip(), re.split("[;:, ]", email_address))
# Bail out non-valid emails
emails = filter(lambda em: is_valid_email_address(em), emails)
if emails:
email = emails[0]
logger.info("Email address assigned for {}: {}"
.format(api.get_id(obj), email))
obj.setEmailAddress(email)
obj.reindexObject()
else:
logger.warn("Cannot resolve email address from '{}'"
.format(email_address))
logger.info("Fixing email addresses [DONE]")
def __call__(self):
# N.B.
form = self.request.form
analyst = self.request.get('analyst', '')
template = self.request.get('template', '')
instrument = self.request.get('instrument', '')
if not analyst:
message = _("Analyst must be specified.")
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.RESPONSE.redirect(self.context.absolute_url())
return
rc = getToolByName(self.context, REFERENCE_CATALOG)
wf = getToolByName(self.context, "portal_workflow")
pm = getToolByName(self.context, "portal_membership")
ws = _createObjectByType("Worksheet", self.context, tmpID())
ws.processForm()
# Set analyst and instrument
ws.setAnalyst(analyst)
if instrument:
ws.setInstrument(instrument)
# Set the default layout for results display
ws.setResultsLayout(self.context.bika_setup.getWorksheetLayout())
# overwrite saved context UID for event subscribers
self.request['context_uid'] = ws.UID()
# if no template was specified, redirect to blank worksheet
if not template:
ws.processForm()
self.request.RESPONSE.redirect(ws.absolute_url() + "/add_analyses")
return
wst = rc.lookupObject(template)
ws.applyWorksheetTemplate(wst)
if ws.getLayout():
self.request.RESPONSE.redirect(ws.absolute_url() +
"/manage_results")
elif api.is_queued(ws):
msg = _("Analyses for {} have been queued".format(_api.get_id(ws)))
self.context.plone_utils.addPortalMessage(msg)
self.request.RESPONSE.redirect(_api.get_url(ws.aq_parent))
else:
msg = _("No analyses were added")
self.context.plone_utils.addPortalMessage(msg)
self.request.RESPONSE.redirect(ws.absolute_url() + "/add_analyses")
def get_item_info(self, brain_or_object):
"""Return the data of this brain or object
"""
return {
"obj": brain_or_object,
"uid": api.get_uid(brain_or_object),
"url": api.get_url(brain_or_object),
"id": api.get_id(brain_or_object),
"title": api.get_title(brain_or_object),
"portal_type": api.get_portal_type(brain_or_object),
"review_state": api.get_workflow_status_of(brain_or_object),
}
def subject(self):
"""Returns the subject of the email
"""
email_subject = api.get_registry_record("senaite.panic.email_subject")
client = self.sample.getClient()
return self.context.translate(
email_subject,
mapping={
"sample_id": api.get_id(self.sample),
"client_id": client.getClientID(),
"client_sample_id": self.sample.getClientSampleID(),
})
def get_id(brain_or_object):
"""Proxy to bika.lims.api.get_id
"""
return api.get_id(brain_or_object)
def get_variables(context, **kw):
"""Prepares a dictionary of key->value pairs usable for ID formatting
"""
# allow portal_type override
portal_type = kw.get("portal_type") or api.get_portal_type(context)
# The variables map hold the values that might get into the constructed id
variables = {
'context': context,
'id': api.get_id(context),
'portal_type': portal_type,
'year': get_current_year(),
'parent': api.get_parent(context),
'seq': 0,
}
# Augment the variables map depending on the portal type
if portal_type == "AnalysisRequest":
variables.update({
'sampleId': context.getSample().getId(),
'sample': context.getSample(),
})
elif portal_type == "SamplePartition":
variables.update({
'sampleId': context.aq_parent.getId(),
'sample': context.aq_parent,
})
elif portal_type == "Sample":
# get the prefix of the assigned sample type
sample_id = context.getId()
sample_type = context.getSampleType()
sampletype_prefix = sample_type.getPrefix()
date_now = DateTime()
sampling_date = context.getSamplingDate()
date_sampled = context.getDateSampled()
# Try to get the date sampled and sampling date
if sampling_date:
samplingDate = DT2dt(sampling_date)
else:
# No Sample Date?
logger.error("Sample {} has no sample date set".format(sample_id))
# fall back to current date
samplingDate = DT2dt(date_now)
if date_sampled:
dateSampled = DT2dt(date_sampled)
else:
# No Sample Date?
logger.error("Sample {} has no sample date set".format(sample_id))
dateSampled = DT2dt(date_now)
variables.update({
'clientId': context.aq_parent.getClientID(),
'dateSampled': dateSampled,
'samplingDate': samplingDate,
'sampleType': sampletype_prefix,
})
return variables
