def upload_narrative(nar_file, auth_token, user_id, url=ci_ws, set_public=False):
"""
Uploads a Narrative from a downloaded object file.
This file needs to be in JSON format, and it expects all
data and info that is usually returned by the Workspace.get_objects
method.
Returns a dict of three elements:
ws: the id of the workspace that was created
obj: the id of the narrative object
ref: the above two joined together into an object ref (for convenience)
"""
# read the file
f = open(nar_file, "r")
nar = json.loads(f.read())
f.close()
# do some setup.
current_nar_metadata = ws_metadata
current_nar_metadata["narrative_nice_name"] = nar["data"]["metadata"]["name"]
ws_client = Workspace(url=url, token=auth_token)
# create the new workspace for the narrative
ws_info = ws_client.create_workspace(
{
"workspace": "{}:{}".format(user_id, str(time.time()).replace(".", "")),
"meta": current_nar_metadata,
"globalread": "r" if set_public else "n",
}
)
ws_id = ws_info[0]
# setup and save the narrative object
nar["info"][10]
ws_save_obj = {
"type": "KBaseNarrative.Narrative",
"data": nar["data"],
"name": nar["info"][1],
"meta": nar["info"][10],
"provenance": [
{
"script": "upload_narrative_test.py",
"description": "Temporary Narrative uploaded for automated testing",
}
],
}
obj_info = ws_client.save_objects({"id": ws_id, "objects": [ws_save_obj]})
# tweak the workspace's metadata to properly present its narrative
ws_client.alter_workspace_metadata(
{"wsi": {"id": ws_id}, "new": {"narrative": obj_info[0][0]}}
)
return {
"ws": ws_info[0],
"obj": obj_info[0][0],
"refstr": "{}/{}".format(ws_info[0], obj_info[0][0]),
"ref": NarrativeRef({"wsid": ws_info[0], "objid": obj_info[0][0]}),
}
def upload_narrative(nar_file, auth_token, user_id, url=ci_ws, set_public=False):
"""
Uploads a Narrative from a downloaded object file.
This file needs to be in JSON format, and it expects all
data and info that is usually returned by the Workspace.get_objects
method.
Returns a dict of three elements:
ws: the id of the workspace that was created
obj: the id of the narrative object
ref: the above two joined together into an object ref (for convenience)
"""
# read the file
f = open(nar_file, 'r')
nar = json.loads(f.read())
f.close()
# do some setup.
current_nar_metadata = ws_metadata
current_nar_metadata['narrative_nice_name'] = nar['data']['metadata']['name']
ws_client = Workspace(url=url, token=auth_token)
# create the new workspace for the narrative
ws_info = ws_client.create_workspace({
'workspace': '{}:{}'.format(user_id, str(time.time()).replace('.', '')),
'meta': current_nar_metadata,
'globalread': 'r' if set_public else 'n'
})
ws_id = ws_info[0]
# setup and save the narrative object
metadata = nar['info'][10]
ws_save_obj = {
'type': 'KBaseNarrative.Narrative',
'data': nar['data'],
'name': nar['info'][1],
'meta': nar['info'][10],
'provenance': [{
'script': 'upload_narrative_test.py',
'description': 'Temporary Narrative uploaded for automated testing'
}]
}
obj_info = ws_client.save_objects({'id': ws_id,
'objects': [ws_save_obj]})
# tweak the workspace's metadata to properly present its narrative
ws_client.alter_workspace_metadata({'wsi': {'id': ws_id}, 'new': {'narrative': obj_info[0][0]}})
return {
'ws': ws_info[0],
'obj': obj_info[0][0],
'refstr': '{}/{}'.format(ws_info[0], obj_info[0][0]),
'ref': NarrativeRef({'wsid': ws_info[0], 'objid': obj_info[0][0]})
}
