def test_check_biopepa_parser(self):
"""Simply check the parsing of a Bio-PEPA model"""
my_source = """
x = 1.0;
y = 2.0 + 3.0;
zz = 1 + 2 * 3;
xy = x + y;
ar = f(1) + g(2);
f = f();
g = g(1.0);
h = h(1.0, 2.0);
i = k(h(1.0));
A = x >> ;
B = y >> + x << ;
A[0] <*> B[x + y]
"""
biopepa_model = biopepa_parser.parse_model(my_source)
expected_number_var_defs = 9
actual_number_var_defs = len(biopepa_model.var_defs)
self.assertEqual(expected_number_var_defs,
actual_number_var_defs)
expected_number_of_comp_defs = 2
actual_number_of_component_defs = len(biopepa_model.component_defs)
self.assertEqual(expected_number_of_comp_defs,
actual_number_of_component_defs)
def convert_source(source):
"""Converts the source of a Bio-PEPA model, represented as a string,
into a string representing the LaTeX source
"""
model = biopepa_parser.parse_model(source)
outfile_imposter = utils.StringFile()
translate_biopepa_model(model, outfile_imposter)
return outfile_imposter.get_results()
def convert_source(source):
"""Converts the source of a Bio-PEPA model, represented as a string,
into a string representing the SBML.
"""
model = biopepa_parser.parse_model(source)
outfile_imposter = utils.StringFile()
sbml_document = translate_biopepa_model(model)
sbml_ast.output_to_file(outfile_imposter, sbml_document)
return outfile_imposter.get_results()