def pipeline(): return get_pipeline(__file__).set_starts(Download).set_data([ "https://www.ncbi.nlm.nih.gov/geo/download/" "?acc=GSE179367" "&format=file" "&file=GSE179367%5Fgene%5Fcount%2Ereal%2Etxt%2Egz", ])
def pipeline(): return get_pipeline(__file__).set_starts( BedConsensus, BedConsensus1, ).set_data([[ Path(__file__).parent / "data" / "in1.bed", Path(__file__).parent / "data" / "in2.bed", Path(__file__).parent / "data" / "in3.bed", ]])
def pipeline(): return get_pipeline(__file__).set_starts(Str2File).set_data([( ("Meta\tId\tsymbol\n" "a\t1255_g_at\t1\n" "b\t1294_at\t2\n" "c\t1316_at\t3\n" "d\tnonexist\t4\n" "e\t1320_at\t5\n"), "data.txt", )])
def pipeline(): return ( get_pipeline(__file__) .set_start(DownloadData) .set_data( [ "https://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123813/" "suppl/GSE123813_bcc_tcell_metadata.txt.gz", "https://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123813/" "suppl/GSE123813_bcc_scRNA_counts.txt.gz", ] ) )
def pipeline(): return get_pipeline(__file__).set_starts(Download, Str2File).set_data( [ "https://www.ncbi.nlm.nih.gov/geo/download/" "?acc=GSE179367" "&format=file" "&file=GSE179367%5Fgene%5Fcount%2Ereal%2Etxt%2Egz", "https://www.genepattern.org/tutorial/linkedFiles/" "export_gnf.GENE_SYMBOL.gmt", ], [( ( "Sample\tGroup\n" "shMMP9_1\tMMP9\n" "shMMP9_2\tMMP9\n" "shMMP9_3\tMMP9\n" "shControl_1\tCTRL\n" "shControl_2\tCTRL\n" "shControl_3\tCTRL\n" ), "samples.txt" )] )
def pipeline(): return get_pipeline(__file__).set_starts(PrepareSeurat)
def pipeline(): return get_pipeline(__file__).set_starts(PrepareImmdata)
def pipeline(): return get_pipeline(__file__).set_starts(Bed2Vcf).set_data( [Path(__file__).parent / "data" / "in.bed"] )
def pipeline(): return (get_pipeline(__file__).set_start(DownloadList).set_data( [Path(__file__).parent / "data" / "vcfs.txt"]))