from mgipython.util import error_template
from mgipython.domain.gxdindex_domains import IndexRecordDomain, IndexStageDomain
from mgipython.model import MGIUser, VocTerm
from mgipython.service.gxdindex_service import GxdIndexService
from mgipython.service_schema.search import Paginator, SearchQuery
from pwi import app
# API Classes
api = Namespace('gxdindex', description='GXD_Index related operations')
# Define how fields should be parsed for incoming requests
# This should match the domain objects used
indexstage_model = api.model('IndexStage', {
'_indexassay_key': fields.Integer,
'_stageid_key': fields.Integer
})
gxdindex_model = api.model('GxdIndexRecord', {
'_index_key': fields.Integer,
'_refs_key': fields.Integer,
'_marker_key': fields.Integer,
'_priority_key': fields.Integer,
'_conditionalmutants_key': fields.Integer,
'comments': fields.String,
'indexstages': fields.List(fields.Nested(indexstage_model)),
# readonly fields
'is_coded': fields.Boolean,
'jnumid': fields.String,
gxdhtexperiment_parser.add_argument("modification_date", type=str)
gxdhtexperiment_parser.add_argument("evaluated_date", type=str)
gxdhtexperiment_parser.add_argument("curated_date", type=str)
gxdhtexperiment_parser.add_argument("lastupdate_date", type=str)
gxdhtexperiment_parser.add_argument("_evaluationstate_key", type=int)
gxdhtexperiment_parser.add_argument("_experiment_key", type=int)
gxdhtexperiment_parser.add_argument("notetext", type=str, help="Description for Notes")
gxdhtexperiment_model = api.model(
"GxdHTExperiment",
{
"_experiment_key": fields.Integer,
"name": fields.String(description="This is the name"),
"description": fields.String(description="This is the description"),
"release_date": fields.Date,
"creation_date": fields.Date,
"modification_date": fields.Date,
"evaluated_date": fields.Date,
"curated_date": fields.Date,
"lastupdate_date": fields.Date,
"_evaluationstate_key": fields.Integer,
"notetext": fields.String,
},
)
@api.route("/", endpoint="gxdhtexperiment-create-resource")
class GxdHTExperimentCreateResource(Resource):
gxdhtexperiment_service = GxdHTExperimentService()
@api.expect(gxdhtexperiment_model)
from mgipython.error import *
from mgipython.service_schema import *
from mgipython.service import *
from pwi import app
import re
api = Namespace('gxdgenotype', description='GXD Genotype API operations')
gxdgenotype_parser = reqparse.RequestParser()
gxdgenotype_parser.add_argument('_genotype_key', type=int, help="Genotype Key")
gxdgenotype_parser.add_argument('_strain_key', type=int, help="Strain Key")
gxdgenotype_parser.add_argument('mgiid', type=str, help="Accession Id for Genotype")
gxdgenotype_model = api.model('Genotype', {
'_genotype_key': fields.Integer,
'_strain_key': fields.Integer,
'mgiid': fields.String(description="MGI Accession Id to search for")
})
@api.route('/search', endpoint='gxdgenotype-search-resource')
class GxdGenotypeSearchResource(Resource):
genotype_service = GxdGenotypeService()
@api.doc(description='Implementation Notes Text Field')
@api.expect(gxdgenotype_parser)
@as_json
def get(self):
"""
Get Genotypes by Parameters
"""
