def mexsession(config):
"Create a BQApi BQSession object based on config"
host = config.get ( 'host.root')
user = config.get ( 'host.user')
passwd = config.get ( 'host.password')
bq = BQSession()
bq.config = config
bq.init_local (user, passwd, bisque_root = host, create_mex = True)
yield bq
bq.close()
def main():
parser = argparse.ArgumentParser(
description='Load maize images and metadata')
parser.add_argument('--imagebase',
default=BASE,
help='Directory to fetch images from (%(default)s)')
parser.add_argument('--bisque_host',
default=BISQUE_ROOT,
help="Upload images to (%(default)s)")
parser.add_argument('--cas',
default=False,
action='store_true',
help="Use CAS for login ( %(default)s )")
parser.add_argument('-n',
'--dryrun',
default=False,
action='store_true',
help="Print actions")
parser.add_argument('-v',
'--verbose',
default=False,
action='store_true',
help="Dump alot of info")
parser.add_argument('-u',
'--credentials',
help="A Bisuqe username:password")
parser.add_argument('-l',
'--limit',
type=int,
help="Limit number of images ")
parser.add_argument('csvfile',
nargs='?',
default='MaizeImaging.csv',
help="A local .csv file")
args = parser.parse_args()
if args.verbose:
logging.basicConfig(level=logging.DEBUG)
print "LIMIT", args.limit
session = BQSession()
session.args = args
# Ensure we have a way to login
if not args.dryrun:
if not args.credentials:
args.credentials = input("Please enter bisque credentials: ")
if ':' not in args.credentials:
password = input("Please enter password: "******":".join([args.credentials, password])
user, password = args.credentials.split(":")
if args.cas:
session.init_cas(user,
password,
bisque_root=args.bisque_host,
create_mex=False)
else:
session.init_local(user,
password,
bisque_root=args.bisque_host,
create_mex=False)
#
#
reader = readcsv(session)
image_data = transform(session, reader)
image_map = transfer_images(session, image_data)
upload_dataset(session, 'maize', [x[1] for x in image_map])
