def get_patient(req, args):
pid = args['paths'][0]
if pid.endswith('.json') and use_db:
pid = pid[:-len('.json')]
pid = omop.get_person_id(pid)
cache_file = os.path.join(json_dir, pid)
p_name = json_dir + pid.strip()
if p_name not in patients:
patients.add(p_name)
save_patients()
if pid.endswith('.json'):
pid = pid[:-len('.json')]
if not os.path.isfile(cache_file) or not use_cache:
if use_db:
patient = omop.get_patient(pid, dict, line_file, class_file)
else:
patient = cms_get_patient.process(all_paths, line_file, class_file, pid)
build_dictionary.extractEntries(dict, patient)
if use_cache:
with open(cache_file, 'w') as pf:
pf.write(json_dumps(patient))
pf.flush()
if use_cache:
with open(dictionary_file, 'w') as output:
output.write(json_dumps(dict))
output.flush()
return patient
with open(cache_file, 'r') as pf:
return json.loads(pf.read())
def processDict(events, id):
if len(events) == 0:
return
#print("processing {1} with {0} events".format(len(events), id), file=sys.stderr)
obj = {"events": events}
dict = {}
build_dictionary.extractEntries(dict, obj)
for group in dict.keys():
cb(id, group, dict[group].keys())
def processDict(events, id):
if len(events) == 0:
return
#print("processing {1} with {0} events".format(len(events), id), file=sys.stderr)
obj = {
"events": events
}
dict = {}
build_dictionary.extractEntries(dict, obj)
for group in dict.keys():
cb(id, group, dict[group].keys())
