Python with_loinc_hierarchy Exemples

Exemple #1

Fichier : test_bunsen_r4.py Projet : datnoor/bunsen

def test_read_hierarchy_file(spark_session):
  ancestors = with_loinc_hierarchy(
      spark_session,
      create_hierarchies(spark_session),
      'tests/resources/LOINC_HIERARCHY_SAMPLE.CSV',
      '2.56').get_ancestors()

  assert set(ancestors.columns) == EXPECTED_COLUMNS

Exemple #2

Fichier : test_bunsen_r4.py Projet : datnoor/bunsen

def test_isa_loinc(spark_session):

  spark_session.sql('create database isa_loinc_ontologies')

  with_loinc_hierarchy(
      spark_session,
      create_hierarchies(spark_session),
      'tests/resources/LOINC_HIERARCHY_SAMPLE.CSV',
      '2.56') \
    .write_to_database('isa_loinc_ontologies')

  create_value_sets(spark_session).write_to_database('isa_loinc_ontologies')

  push_valuesets(spark_session,
                 {'leukocytes' : isa_loinc('LP14738-6')},
                 database='isa_loinc_ontologies')

  expected = {'leukocytes' : [('http://loinc.org', '5821-4'),
                              ('http://loinc.org', 'LP14738-6'),
                              ('http://loinc.org', 'LP14419-3')]}
  assert get_current_valuesets(spark_session) == expected