def test_design_to_gnomic(self):
from gnomic import Genotype
t1 = ReactionKnockoutTarget('PGI')
t2 = ReactionKnockoutTarget('GAPD')
t3 = ReactionKnockinTarget("CAD", self.cad_reaction)
strain_design1 = StrainDesign([t1, t2, t3])
sd_gnomic = strain_design1.to_gnomic()
self.assertIsInstance(sd_gnomic, Genotype)
self.assertEqual(len(sd_gnomic.added_features), 1)
self.assertEqual(len(sd_gnomic.removed_features), 2)
def test_design_to_gnomic(self, cad_reaction):
from gnomic import Genotype
t1 = ReactionKnockoutTarget('PGI')
t2 = ReactionKnockoutTarget('GAPD')
t3 = ReactionKnockinTarget("CAD", cad_reaction)
strain_design1 = StrainDesign([t1, t2, t3])
sd_gnomic = strain_design1.to_gnomic()
assert isinstance(sd_gnomic, Genotype)
assert len(sd_gnomic.added_features) == 1
assert len(sd_gnomic.removed_features) == 2
def test_design_to_gnomic(self, cad_reaction):
from gnomic import Genotype
t1 = ReactionKnockoutTarget('PGI')
t2 = ReactionKnockoutTarget('GAPD')
t3 = ReactionKnockinTarget("CAD", cad_reaction)
strain_design1 = StrainDesign([t1, t2, t3])
sd_gnomic = strain_design1.to_gnomic()
assert isinstance(sd_gnomic, Genotype)
assert len(sd_gnomic.added_features) == 1
assert len(sd_gnomic.removed_features) == 2