""" # noqa
# =============================================================================
# Directory constants
# =============================================================================
THIS_DIR = os.path.dirname(os.path.abspath(__file__)) # tools
SETUP_PY_DIR = os.path.abspath(join(THIS_DIR, os.pardir))
PROJECT_BASE_DIR = os.path.abspath(join(THIS_DIR, os.pardir, os.pardir))
DSTBASEDIR = LINUX_DEFAULT_CAMCOPS_DIR
TMPDIR = tempfile.mkdtemp()
log.info("Temporary working directory: " + TMPDIR)
WRKDIR = join(TMPDIR, "debian")
RPMTOPDIR = join(TMPDIR, "rpmbuild")
SRCSERVERDIR = join(PROJECT_BASE_DIR, "server")
DOCROOTDIR = join(PROJECT_BASE_DIR, "documentation")
PACKAGEDIR = join(SRCSERVERDIR, "packagebuild")
DSTDOCDIR = join("/usr/share/doc", PACKAGE_DEB_NAME)
WRKDOCDIR = workpath(WRKDIR, DSTDOCDIR)
WRKBASEDIR = workpath(WRKDIR, DSTBASEDIR)
DEBDIR = join(WRKDIR, "DEBIAN")
# ... where Debian package control information lives
DEBOVERRIDEDIR = workpath(WRKDIR, "/usr/share/lintian/overrides")
permitted_values_ok,
)
from camcops_server.cc_modules.cc_sqlalchemy import Base
log = BraceStyleAdapter(logging.getLogger(__name__))
# =============================================================================
# 1. Explore the metaclass system in detail
# =============================================================================
MODIFY_CLASS = True
if __name__ == "__main__":
# Before classes are even declared:
main_only_quicksetup_rootlogger()
log.info("Module starting to load.")
def add_multiple_fields(
cls: Type,
first: int,
last: int,
prefix: str,
coltype: Type,
colkwargs: Dict[str, Any] = None,
) -> None:
colkwargs = {} if colkwargs is None else colkwargs # type: Dict[str, Any]
for n in range(first, last + 1):
nstr = str(n)
colname = prefix + nstr
setattr(cls, colname, Column(colname, coltype, **colkwargs))
query_times_df = DataFrame.from_records(query_times_arr)
log.debug("query_times_df:\n{!r}", query_times_df)
timelines = drug_timelines(
drug_events_df=drug_events_df,
event_lasts_for=event_lasts_for,
patient_colname=DEFAULT_PATIENT_COLNAME,
event_datetime_colname=DEFAULT_DRUG_EVENT_DATETIME_COLNAME)
log.debug("timelines: {!r}", timelines)
cumulative = cumulative_time_on_drug(
drug_events_df=drug_events_df,
event_lasts_for_timedelta=event_lasts_for,
query_times_df=query_times_df,
patient_colname=DEFAULT_PATIENT_COLNAME,
event_datetime_colname=DEFAULT_DRUG_EVENT_DATETIME_COLNAME,
start_colname=DEFAULT_START_DATETIME_COLNAME,
when_colname=DEFAULT_QUERY_DATETIME_COLNAME)
log.debug("cumulative:\n{}", cumulative)
# =============================================================================
# main
# =============================================================================
if __name__ == "__main__":
main_only_quicksetup_rootlogger(level=logging.DEBUG)
log.info("Running unit tests")
unittest.main(argv=[sys.argv[0]])
sys.exit(0)
- ensure that all models are loaded;
- provide log message around some of the slow imports.
"""
# SET UP LOGGING BEFORE WE IMPORT CAMCOPS MODULES, allowing them to log during
# imports (see e.g. cc_plot).
# Currently sets up colour logging even if under WSGI environment. This is fine
# for gunicorn from the command line; I'm less clear about whether the disk
# logs look polluted by ANSI codes; needs checking.
import logging
from cardinal_pythonlib.logs import BraceStyleAdapter
log = BraceStyleAdapter(logging.getLogger(__name__))
log.info("Imports starting")
# Main imports
import os # nopep8
import platform # nopep8
import subprocess # nopep8
import tempfile # nopep8
from typing import Any, Dict, List, Optional, TYPE_CHECKING # nopep8
import unittest # nopep8
import cherrypy # nopep8
try:
from gunicorn.app.base import BaseApplication
except ImportError:
BaseApplication = None # e.g. on Windows: "ImportError: no module named 'fcntl'". # noqa
