from typing import List, Optional
import numpy as np
import pandas as pd
from cascade_at.executor.args.arg_utils import ArgumentList
from cascade_at.executor.args.args import ModelVersionID, BoolArg, ListArg, StrArg, LogLevel
from cascade_at.context.model_context import Context
from cascade_at.core.log import get_loggers, LEVELS
from cascade_at.dismod.api.dismod_io import DismodIO
LOG = get_loggers(__name__)
ARG_LIST = ArgumentList([
ModelVersionID(),
ListArg('--locations', help='The locations to pull mulcov statistics from', type=int, required=True),
ListArg('--sexes', help='The sexes to pull mulcov statistics from', type=int, required=True),
StrArg('--outfile-name', help='Filepath where mulcov statistics will be saved', required=False, default='mulcov_stats'),
BoolArg('--sample', help='If true, the results will be pulled from the sample table rather'
'than the fit_var table'),
BoolArg('--mean', help='Whether or not to compute the mean'),
BoolArg('--std', help='Whether or not to compute the standard deviation'),
ListArg('--quantile', help='Quantiles to compute', type=float),
LogLevel()
])
def common_covariate_names(dbs):
return set.intersection(
*map(set, [d.covariate.c_covariate_name.tolist() for d in dbs])
import logging
import os
import sys
from cascade_at.executor.args.arg_utils import ArgumentList
from cascade_at.executor.args.args import ModelVersionID, LogLevel
from cascade_at.context.model_context import Context
from cascade_at.core.log import get_loggers, LEVELS
LOG = get_loggers(__name__)
ARG_LIST = ArgumentList([ModelVersionID(), LogLevel()])
def cleanup(model_version_id: int) -> None:
"""
Delete all databases (.db) files attached to a model version.
Parameters
----------
model_version_id
The model version ID to delete databases for
"""
context = Context(model_version_id=model_version_id)
for root, dirs, files in os.walk(context.database_dir):
for f in files:
if f.endswith(".db"):
file = context.database_dir / root / f
LOG.info(f"Deleting {file}.")
os.remove(file)
def test_model_version_id():
a = ModelVersionID()
assert a._flag == '--model-version-id'
assert a._parser_kwargs['type'] == int
assert a._parser_kwargs['required']
def test_argument_list_task_args():
arg1 = IntArg('--foo')
al = ArgumentList([arg1, ModelVersionID()])
assert al.task_args == ['model_version_id']
assert al.node_args == ['foo']