Exemple #1
0
from cascade_at.dismod.api.run_dismod import run_dismod_commands

from cascade_at.executor.args.arg_utils import ArgumentList
from cascade_at.executor.args.args import DmCommands, DmOptions, ParentLocationID, SexID
from cascade_at.executor.args.args import ModelVersionID, BoolArg, LogLevel, StrArg, IntArg
from cascade_at.inputs.measurement_inputs import MeasurementInputs
from cascade_at.model.grid_alchemy import Alchemy
from cascade_at.saver.results_handler import ResultsHandler
from cascade_at.settings.settings_config import SettingsConfig
from cascade_at.model.priors import Gaussian, _Prior

LOG = get_loggers(__name__)

ARG_LIST = ArgumentList([
    ModelVersionID(),
    ParentLocationID(),
    SexID(),
    DmCommands(),
    DmOptions(),
    BoolArg('--fill',
            help='whether or not to fill the dismod database with data'),
    BoolArg(
        '--prior-samples',
        help='whether or not the prior came from samples or just a mean fit'),
    IntArg(
        '--prior-parent',
        help='the location ID of the parent database to grab the prior for'),
    IntArg('--prior-sex',
           help='the sex ID of the parent database to grab prior for'),
    IntArg('--prior-mulcov',
           help='the model version id where mulcov stats is passed in',
Exemple #2
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def test_parent_location_id():
    a = ParentLocationID()
    assert a._flag == '--parent-location-id'
    assert a._parser_kwargs['type'] == int
    assert a._parser_kwargs['required']