def _prepare_logger(self, logdir, mode):
if logdir is not None:
timestamp = utils.get_utcnow_time()
logpath = f"{logdir}/" \
f"sampler.{mode}.{self._sampler_id}.{timestamp}"
os.makedirs(logpath, exist_ok=True)
self.logdir = logpath
self.logger = SummaryWriter(logpath)
else:
self.logdir = None
self.logger = None
def on_stage_start(self, state: State):
"""@TODO: Docs. Contribution is welcome."""
assert state.logdir is not None
extra_mode = "_base"
log_dir = os.path.join(state.logdir, f"{extra_mode}_log")
self.loggers[extra_mode] = SummaryWriter(log_dir)
def on_loader_start(self, state):
"""Prepare tensorboard writers for the current stage"""
if state.logdir is None:
return
lm = state.loader_name
if lm not in self.loggers:
log_dir = os.path.join(state.logdir, f"{lm}_log")
self.loggers[lm] = SummaryWriter(log_dir)
def dump_environment(
experiment_config: Dict,
logdir: str,
configs_path: List[str] = None,
) -> None:
"""
Saves config, environment variables and package list in JSON into logdir
Args:
experiment_config (dict): experiment config
logdir (str): path to logdir
configs_path: path(s) to config
"""
configs_path = configs_path or []
configs_path = [
Path(path) for path in configs_path if isinstance(path, str)
]
config_dir = Path(logdir) / "configs"
config_dir.mkdir(exist_ok=True, parents=True)
environment = get_environment_vars()
safitty.save(experiment_config, config_dir / "_config.json")
safitty.save(environment, config_dir / "_environment.json")
pip_pkg = list_pip_packages()
(config_dir / "pip-packages.txt").write_text(pip_pkg)
conda_pkg = list_conda_packages()
if conda_pkg:
(config_dir / "conda-packages.txt").write_text(conda_pkg)
for path in configs_path:
name: str = path.name
outpath = config_dir / name
shutil.copyfile(path, outpath)
config_str = json.dumps(experiment_config, indent=2, ensure_ascii=False)
config_str = config_str.replace("\n", "\n\n")
environment_str = json.dumps(environment, indent=2, ensure_ascii=False)
environment_str = environment_str.replace("\n", "\n\n")
pip_pkg = pip_pkg.replace("\n", "\n\n")
conda_pkg = conda_pkg.replace("\n", "\n\n")
with SummaryWriter(config_dir) as writer:
writer.add_text("_config", config_str, 0)
writer.add_text("_environment", environment_str, 0)
writer.add_text("pip-packages", pip_pkg, 0)
if conda_pkg:
writer.add_text("conda-packages", conda_pkg, 0)
def main(args, _=None):
"""Run ``catalyst-data project-embeddings`` script."""
df = pd.read_csv(args.in_csv)
os.makedirs(args.out_dir, exist_ok=True)
if args.meta_cols is not None:
meta_header = args.meta_cols.split(",")
else:
raise ValueError("meta-cols must not be None")
features = np.load(args.in_npy, mmap_mode="r")
if args.num_rows is not None:
df = df.sample(n=args.num_rows)
if args.img_col is not None:
image_names = [
path.join(args.img_rootpath, name)
for name in df[args.img_col].values
]
img_data = np.stack(
[load_image(name, args.img_size) for name in image_names], axis=0)
img_data = (img_data.transpose(
(0, 3, 1, 2)) / 255.0).astype(np.float32)
img_data = torch.from_numpy(img_data)
else:
img_data = None
summary_writer = SummaryWriter(args.out_dir)
summary_writer.add_embedding(
features,
metadata=df[meta_header].astype(str).values,
label_img=img_data,
metadata_header=meta_header,
)
summary_writer.close()
print(f"Done. Run `tensorboard --logdir={args.out_dir}` "
f"to view in Tensorboard")
def on_loader_start(self, state: State):
"""Prepare tensorboard writers for the current stage"""
if state.loader_name not in self.loggers:
log_dir = os.path.join(state.logdir, f"{state.loader_name}_log")
self.loggers[state.loader_name] = SummaryWriter(log_dir)
def on_stage_start(self, state: State):
assert state.logdir is not None
extra_mode = "_base"
log_dir = os.path.join(state.logdir, f"{extra_mode}_log")
self.loggers[extra_mode] = SummaryWriter(log_dir)
class TrainerSpec:
def __init__(
self,
algorithm: AlgorithmSpec,
env_spec: EnvironmentSpec,
db_server: DBSpec,
logdir: str,
num_workers: int = 1,
batch_size: int = 64,
min_num_transitions: int = int(1e4),
online_update_period: int = 1,
weights_sync_period: int = 1,
save_period: int = 10,
gc_period: int = 10,
seed: int = 42,
epoch_limit: int = None,
monitoring_params: Dict = None,
**kwargs,
):
# algorithm & environment
self.algorithm = algorithm
self.env_spec = env_spec
# logging
self.logdir = logdir
self._prepare_logger(logdir)
self._seeder = Seeder(init_seed=seed)
# updates & counters
self.batch_size = batch_size
self.num_workers = num_workers
self.epoch = 0
self.update_step = 0
self.num_updates = 0
self._num_trajectories = 0
self._num_transitions = 0
# updates configuration
# (actor_period, critic_period)
self.actor_grad_period, self.critic_grad_period = \
utils.make_tuple(online_update_period)
# synchronization configuration
self.db_server = db_server
self.min_num_transitions = min_num_transitions
self.save_period = save_period
self.weights_sync_period = weights_sync_period
self._gc_period = gc_period
self.replay_buffer = None
self.replay_sampler = None
self.loader = None
self._epoch_limit = epoch_limit
# special
self.monitoring_params = monitoring_params
self._prepare_seed()
self._init(**kwargs)
def _init(self, **kwargs):
global WANDB_ENABLED
assert len(kwargs) == 0
if WANDB_ENABLED:
if self.monitoring_params is not None:
self.checkpoints_glob: List[str] = \
self.monitoring_params.pop("checkpoints_glob", [])
wandb.init(**self.monitoring_params)
logdir_src = Path(self.logdir)
logdir_dst = Path(wandb.run.dir)
configs_src = logdir_src.joinpath("configs")
os.makedirs(f"{logdir_dst}/{configs_src.name}", exist_ok=True)
shutil.rmtree(f"{logdir_dst}/{configs_src.name}")
shutil.copytree(f"{str(configs_src.absolute())}",
f"{logdir_dst}/{configs_src.name}")
code_src = logdir_src.joinpath("code")
if code_src.exists():
os.makedirs(f"{logdir_dst}/{code_src.name}", exist_ok=True)
shutil.rmtree(f"{logdir_dst}/{code_src.name}")
shutil.copytree(f"{str(code_src.absolute())}",
f"{logdir_dst}/{code_src.name}")
else:
WANDB_ENABLED = False
self.wandb_mode = "trainer"
def _prepare_logger(self, logdir):
timestamp = utils.get_utcnow_time()
logpath = f"{logdir}/trainer.{timestamp}"
os.makedirs(logpath, exist_ok=True)
self.logger = SummaryWriter(logpath)
def _prepare_seed(self):
seed = self._seeder()[0]
set_global_seed(seed)
def _log_to_console(self, fps: float, updates_per_sample: float,
num_trajectories: int, num_transitions: int,
buffer_size: int, **kwargs):
prefix = f"--- Epoch {self.epoch:09d}/{self._epoch_limit:09d}" \
if self._epoch_limit is not None \
else f"--- Epoch {self.epoch:09d}"
metrics = [
prefix,
f"fps: {fps:7.1f}",
f"updates per sample: {updates_per_sample:7.1f}",
f"trajectories: {num_trajectories:09d}",
f"transitions: {num_transitions:09d}",
f"buffer size: {buffer_size:09d}",
]
metrics = " | ".join(metrics)
print(metrics)
def _log_to_tensorboard(self, fps: float, updates_per_sample: float,
num_trajectories: int, num_transitions: int,
buffer_size: int, **kwargs):
self.logger.add_scalar("fps", fps, self.epoch)
self.logger.add_scalar("updates_per_sample", updates_per_sample,
self.epoch)
self.logger.add_scalar("num_trajectories", num_trajectories,
self.epoch)
self.logger.add_scalar("num_transitions", num_transitions, self.epoch)
self.logger.add_scalar("buffer_size", buffer_size, self.epoch)
self.logger.flush()
@staticmethod
def _log_wandb_metrics(metrics: Dict,
step: int,
mode: str,
suffix: str = ""):
metrics = {
f"{mode}/{key}{suffix}": value
for key, value in metrics.items()
}
step = None # @TODO: fix, wandb issue
wandb.log(metrics, step=step)
def _log_to_wandb(self, *, step, suffix="", **metrics):
if WANDB_ENABLED:
self._log_wandb_metrics(metrics,
step=step,
mode=self.wandb_mode,
suffix=suffix)
def _save_wandb(self):
if WANDB_ENABLED:
logdir_src = Path(self.logdir)
logdir_dst = Path(wandb.run.dir)
events_src = list(logdir_src.glob("events.out.tfevents*"))
if len(events_src) > 0:
events_src = events_src[0]
os.makedirs(f"{logdir_dst}/{logdir_src.name}", exist_ok=True)
shutil.copy2(
f"{str(events_src.absolute())}",
f"{logdir_dst}/{logdir_src.name}/{events_src.name}")
def _save_checkpoint(self):
if self.epoch % self.save_period == 0:
checkpoint = self.algorithm.pack_checkpoint()
checkpoint["epoch"] = self.epoch
filename = utils.save_checkpoint(logdir=self.logdir,
checkpoint=checkpoint,
suffix=str(self.epoch))
print(f"Checkpoint saved to: {filename}")
def _update_sampler_weights(self):
if self.epoch % self.weights_sync_period == 0:
checkpoint = self.algorithm.pack_checkpoint(with_optimizer=False)
for key in checkpoint:
checkpoint[key] = {
k: v.detach().cpu().numpy()
for k, v in checkpoint[key].items()
}
self.db_server.put_checkpoint(checkpoint=checkpoint,
epoch=self.epoch)
def _update_target_weights(self, update_step) -> Dict:
pass
def _run_loader(self, loader: DataLoader) -> Dict:
start_time = time.time()
# @TODO: add average meters
for batch in loader:
metrics: Dict = self.algorithm.train(
batch,
actor_update=(self.update_step % self.actor_grad_period == 0),
critic_update=(self.update_step % self.critic_grad_period
== 0)) or {}
self.update_step += 1
metrics_ = self._update_target_weights(self.update_step) or {}
metrics.update(**metrics_)
metrics = dict((key, value) for key, value in metrics.items()
if isinstance(value, (float, int)))
for key, value in metrics.items():
self.logger.add_scalar(key, value, self.update_step)
self._log_to_wandb(step=self.update_step,
suffix="_batch",
**metrics)
elapsed_time = time.time() - start_time
elapsed_num_updates = len(loader) * loader.batch_size
self.num_updates += elapsed_num_updates
fps = elapsed_num_updates / elapsed_time
output = {"elapsed_time": elapsed_time, "fps": fps}
return output
def _run_epoch(self) -> Dict:
raise NotImplementedError()
def _run_epoch_loop(self):
self._prepare_seed()
metrics: Dict = self._run_epoch()
self.epoch += 1
self._log_to_console(**metrics)
self._log_to_tensorboard(**metrics)
self._log_to_wandb(step=self.epoch, suffix="_epoch", **metrics)
self._save_checkpoint()
self._save_wandb()
self._update_sampler_weights()
if self.epoch % self._gc_period == 0:
gc.collect()
def _run_train_stage(self):
self.db_server.push_message(self.db_server.Message.ENABLE_TRAINING)
epoch_limit = self._epoch_limit or np.iinfo(np.int32).max
while self.epoch < epoch_limit:
try:
self._run_epoch_loop()
except Exception as ex:
self.db_server.push_message(
self.db_server.Message.DISABLE_TRAINING)
raise ex
self.db_server.push_message(self.db_server.Message.DISABLE_TRAINING)
def _start_train_loop(self):
self._run_train_stage()
def run(self):
self._update_sampler_weights()
self._start_train_loop()
self.logger.close()
def _prepare_logger(self, logdir):
timestamp = utils.get_utcnow_time()
logpath = f"{logdir}/trainer.{timestamp}"
os.makedirs(logpath, exist_ok=True)
self.logger = SummaryWriter(logpath)
class Sampler:
def __init__(
self,
agent: Union[ActorSpec, CriticSpec],
env: EnvironmentSpec,
db_server: DBSpec = None,
exploration_handler: ExplorationHandler = None,
logdir: str = None,
id: int = 0,
mode: str = "infer", # train/valid/infer
deterministic: bool = None,
weights_sync_period: int = 1,
weights_sync_mode: str = None,
sampler_seed: int = 42,
trajectory_seeds: List = None,
trajectory_limit: int = None,
force_store: bool = False,
gc_period: int = 10,
monitoring_params: Dict = None,
**kwargs):
self._device = utils.get_device()
self._sampler_id = id
self._deterministic = deterministic \
if deterministic is not None \
else mode in ["valid", "infer"]
self.trajectory_seeds = trajectory_seeds
self._seeder = Seeder(init_seed=sampler_seed)
# logging
self._prepare_logger(logdir, mode)
self._sampling_flag = mp.Value(c_bool, False)
self._training_flag = mp.Value(c_bool, True)
# environment, model, exploration & action handlers
self.env = env
self.agent = agent
self.exploration_handler = exploration_handler
self.trajectory_index = 0
self.trajectory_sampler = TrajectorySampler(
env=self.env,
agent=self.agent,
device=self._device,
deterministic=self._deterministic,
sampling_flag=self._sampling_flag)
# synchronization configuration
self.db_server = db_server
self._weights_sync_period = weights_sync_period
self._weights_sync_mode = weights_sync_mode
self._trajectory_limit = trajectory_limit or np.iinfo(np.int32).max
self._force_store = force_store
self._gc_period = gc_period
self._db_loop_thread = None
self.checkpoint = None
# special
self.monitoring_params = monitoring_params
self._init(**kwargs)
def _init(self, **kwargs):
global WANDB_ENABLED
assert len(kwargs) == 0
if WANDB_ENABLED:
if self.monitoring_params is not None:
self.checkpoints_glob: List[str] = \
self.monitoring_params.pop(
"checkpoints_glob", ["best.pth", "last.pth"])
wandb.init(**self.monitoring_params)
else:
WANDB_ENABLED = False
self.wandb_mode = "sampler"
def _prepare_logger(self, logdir, mode):
if logdir is not None:
timestamp = utils.get_utcnow_time()
logpath = f"{logdir}/" \
f"sampler.{mode}.{self._sampler_id}.{timestamp}"
os.makedirs(logpath, exist_ok=True)
self.logdir = logpath
self.logger = SummaryWriter(logpath)
else:
self.logdir = None
self.logger = None
def _start_db_loop(self):
if self.db_server is None:
self._training_flag.value = True
self._sampling_flag.value = True
return
self._db_loop_thread = threading.Thread(target=_db2sampler_loop,
kwargs={
"sampler": self,
})
self._db_loop_thread.start()
def load_checkpoint(self,
*,
filepath: str = None,
db_server: DBSpec = None):
if filepath is not None:
checkpoint = utils.load_checkpoint(filepath)
elif db_server is not None:
checkpoint = db_server.get_checkpoint()
while checkpoint is None:
time.sleep(3.0)
checkpoint = db_server.get_checkpoint()
else:
raise NotImplementedError("No checkpoint found")
self.checkpoint = checkpoint
weights = self.checkpoint[f"{self._weights_sync_mode}_state_dict"]
weights = {
k: utils.any2device(v, device=self._device)
for k, v in weights.items()
}
self.agent.load_state_dict(weights)
self.agent.to(self._device)
self.agent.eval()
def _store_trajectory(self, trajectory, raw=False):
if self.db_server is None:
return
self.db_server.put_trajectory(trajectory, raw=raw)
def _get_seed(self):
if self.trajectory_seeds is not None:
seed = self.trajectory_seeds[self.trajectory_index %
len(self.trajectory_seeds)]
else:
seed = self._seeder()[0]
set_global_seed(seed)
return seed
def _log_to_console(self, *, reward, raw_reward, num_steps, elapsed_time,
seed):
metrics = [
f"trajectory {int(self.trajectory_index):05d}",
f"steps: {int(num_steps):05d}",
f"reward: {reward:9.3f}",
f"raw_reward: {raw_reward:9.3f}",
f"time: {elapsed_time:9.3f}",
f"seed: {seed:010d}",
]
metrics = " | ".join(metrics)
print(f"--- {metrics}")
def _log_to_tensorboard(self, *, reward, raw_reward, num_steps,
elapsed_time, **kwargs):
if self.logger is not None:
self.logger.add_scalar("trajectory/num_steps", num_steps,
self.trajectory_index)
self.logger.add_scalar("trajectory/reward", reward,
self.trajectory_index)
self.logger.add_scalar("trajectory/raw_reward", raw_reward,
self.trajectory_index)
self.logger.add_scalar("time/trajectories_per_minute",
60. / elapsed_time, self.trajectory_index)
self.logger.add_scalar("time/steps_per_second",
num_steps / elapsed_time,
self.trajectory_index)
self.logger.add_scalar("time/trajectory_time_sec", elapsed_time,
self.trajectory_index)
self.logger.add_scalar("time/step_time_sec",
elapsed_time / num_steps,
self.trajectory_index)
self.logger.flush()
@staticmethod
def _log_wandb_metrics(metrics: Dict,
step: int,
mode: str,
suffix: str = ""):
metrics = {
f"{mode}/{key}{suffix}": value
for key, value in metrics.items()
}
step = None # @TODO: fix, wandb issue
wandb.log(metrics, step=step)
def _log_to_wandb(self, *, step, suffix="", **metrics):
if WANDB_ENABLED:
self._log_wandb_metrics(metrics,
step=step,
mode=self.wandb_mode,
suffix=suffix)
def _save_wandb(self):
if WANDB_ENABLED:
logdir_src = Path(self.logdir)
logdir_dst = Path(wandb.run.dir)
events_src = list(logdir_src.glob("events.out.tfevents*"))
if len(events_src) > 0:
events_src = events_src[0]
os.makedirs(f"{logdir_dst}/{logdir_src.name}", exist_ok=True)
shutil.copy2(
f"{str(events_src.absolute())}",
f"{logdir_dst}/{logdir_src.name}/{events_src.name}")
@torch.no_grad()
def _run_trajectory_loop(self):
seed = self._get_seed()
exploration_strategy = \
self.exploration_handler.get_exploration_strategy() \
if self.exploration_handler is not None \
else None
self.trajectory_sampler.reset(exploration_strategy)
start_time = time.time()
trajectory, trajectory_info = self.trajectory_sampler.sample(
exploration_strategy=exploration_strategy)
elapsed_time = time.time() - start_time
trajectory_info = trajectory_info or {}
trajectory_info.update({"elapsed_time": elapsed_time, "seed": seed})
return trajectory, trajectory_info
def _run_sample_loop(self):
while self._training_flag.value:
while not self._sampling_flag.value:
if not self._training_flag.value:
return
time.sleep(5.0)
# 1 – load from db, 2 – resume load trick (already have checkpoint)
need_checkpoint = \
self.db_server is not None or self.checkpoint is None
if self.trajectory_index % self._weights_sync_period == 0 \
and need_checkpoint:
self.load_checkpoint(db_server=self.db_server)
self._save_wandb()
trajectory, trajectory_info = self._run_trajectory_loop()
if trajectory is None:
continue
raw_trajectory = trajectory_info.pop("raw_trajectory", None)
# Do it firsthand, so the loggers don't crush
if not self._deterministic or self._force_store:
self._store_trajectory(trajectory)
if raw_trajectory is not None:
self._store_trajectory(raw_trajectory, raw=True)
self._log_to_console(**trajectory_info)
self._log_to_tensorboard(**trajectory_info)
self._log_to_wandb(step=self.trajectory_index, **trajectory_info)
self.trajectory_index += 1
if self.trajectory_index % self._gc_period == 0:
gc.collect()
if not self._training_flag.value \
or self.trajectory_index >= self._trajectory_limit:
return
def _start_sample_loop(self):
self._run_sample_loop()
def run(self):
self._start_db_loop()
self._start_sample_loop()
if self.logger is not None:
self.logger.close()
