def _test_to_json(fp):
"""Verify CCDA document can be converted to a JSON."""
ccda_doc = ccda.CcdaDocument(fp)
json_message = ccda_doc.to_json()
#self.assertTrue(json_message, "JSON is not successfully created")
# TODO: Implement stronger test. Verify generated message against testdata.
JSON_file = json.loads(json_message) # string complete_JSON to JSON file
for elements in JSON_file: # Each elements under json file, such as 'medication', 'vitals', 'labs' e.t.c
if elements in ['vitals']:
msg = "\n---Testing for " + elements + " from file " + str(
fp.name) + "---"
logging.info(msg)
for entry in range(
len(JSON_file[elements])
): # An entry is a dictionary from a list of entries (dictionaries) for elements
for key in JSON_file[elements][
entry]: # Key value is a name for each <name:value> in an entry
global vital_code
vital_code = None
if type(JSON_file[elements][entry][key]) == dict:
verify_dict_entry(key, JSON_file[elements][entry],
JSON_file[elements][entry][key])
elif type(JSON_file[elements][entry][key]) == list:
verify_list_entry(key, JSON_file[elements][entry],
JSON_file[elements][entry][key])
else:
if JSON_file[elements][entry][key] in ['', ' ', None]:
logging.error(
"Value for field: [%s] under <%s> ~ for value type %s",
key, JSON_file[elements][entry],
type(JSON_file[elements][entry][key]))
def _test_to_json(fp):
"""Verify CCDA document can be converted to a JSON."""
ccda_doc = ccda.CcdaDocument(fp)
json_message = ccda_doc.to_json()
#self.assertTrue(json_message, "JSON is not successfully created")
# TODO: Implement stronger test. Verify generated message against testdata.
JSON_file = json.loads(json_message) # string complete_JSON to JSON file
for elements in JSON_file: # Each elements under json file, such as 'medication', 'vitals', 'labs' e.t.c
if elements in ['allergies']:
msg = "\n---Testing for " + elements + " from file " + str(
fp.name) + "---"
logging.info(msg)
for entry in range(
len(JSON_file[elements])
): # An entry is a dictionary from a list of entries (dictionaries) for elements
'''
{ JSON_file['allergies'][0] =
"reaction": {"code_system_name": "SNOMED CT", "code": "422587007", "name": "Nausea (finding)","code_system": "2.16.840.1.113883.6.96"},
"code": {"code_system_name": "RxNorm", "code": "2670", "name": "Codeine","code_system": "2.16.840.1.113883.6.88"},
"severity": {"code_system_name": "SNOMED CT", "code": "6736007", "name": "", "code_system": "2.16.840.1.113883.6.96"}
}
'''
for key in JSON_file[elements][
entry]: # Key value is a name for each <name:value> in an entry
'''
key is "reaction" or "code" or "severity"
JSON_file['allergies'][0]["reaction"] ={"code_system_name": "SNOMED CT", "code": "422587007",
"name": "Nausea (finding)","code_system": "2.16.840.1.113883.6.96"}
'''
if type(JSON_file[elements][entry][key]) == dict:
verify_dict_entry(key, JSON_file[elements][entry],
JSON_file[elements][entry][key])
'''elif type(JSON_file[elements][entry][key]) == list:
def _test_to_message(self, fp):
"""Verify CCDA document can be converted to a ProtoRPC message."""
ccda_doc = ccda.CcdaDocument(fp)
ccda_message = ccda_doc.to_message()
self.assertTrue(ccda_message)
def _test_to_csv(self, fp):
"""Verify CCDA document can be converted to a CSV file."""
ccda_doc = ccda.CcdaDocument(fp)
ccda_csv = ccda_doc.to_csv()
self.assertTrue(ccda_csv)
def _test_to_json(fp):
"""Verify CCDA document can be converted to a JSON."""
ccda_doc = ccda.CcdaDocument(fp)
json_message = ccda_doc.to_json()
#self.assertTrue(json_message, "JSON is not successfully created")
# TODO: Implement stronger test. Verify generated message against testdata.
JSON_file = json.loads(json_message) # string complete_JSON to JSON file
for elements in JSON_file: # Each elements under json file, such as 'medication', 'vitals', 'labs' e.t.c
if elements in [
'medications', 'immunizations', 'problems', 'labs',
'procedures'
]:
msg = "\n---Testing for " + elements + " from file " + str(
fp.name) + "---"
logging.info(msg)
for entry in range(
len(JSON_file[elements])
): # An entry is a dictionary from a list of entries (dictionaries) for elements
'''
JSON_file['medications'][0] =
{
"date_range": {},
"product": {
"code": {"code": "311041", "name": "Insulin Glargine 100 UNT/ML Injectable Solution",
"code_system": "2.16.840.1.113883.6.88"}
},
"dose_quantity": {"unit": "1", "value": "30.0"}
}
JSON_file['labs'][0] =
{
{"code": {"code": ""},
"results": [{"date": "2013-01-24T13:12:12","code": {"code": "718-7", "name": "Hgb Bld-mCnc", "code_system": "2.16.840.1.113883.6.1"},
"unit": "g/dL", "value": "15.0"}]
}
'''
for key in JSON_file[elements][
entry]: # Key value is a name for each <name:value> in an entry
'''
key is "product" or "date_range" or "severity"
JSON_file['medications'][0]["product"] = {"code": {"code": "311041", "name": "Insulin Glargine 100 UNT/ML Injectable Solution",
"code_system": "2.16.840.1.113883.6.88"}}
OR
key is "code" or "results"
JSON_file['labs'][0]["results"] = [{"date": "2013-01-24T13:12:12",
"code": {"code": "718-7", "name": "Hgb Bld-mCnc", "code_system": "2.16.840.1.113883.6.1"},
"unit": "g/dL", "value": "15.0"}]
JSON_file['labs'][0]["code"] = {"code": ""}
'''
if type(JSON_file[elements][entry][key]) == dict:
''' elements like : 'medications' or 'immunizations' or 'problems' or 'procedures']'''
verify_dict_entry(elements, key,
JSON_file[elements][entry],
JSON_file[elements][entry][key])
elif type(JSON_file[elements][entry][key]) == list:
''' elements like : 'labs' '''
verify_list_entry(elements, key,
JSON_file[elements][entry],
JSON_file[elements][entry][key])
''' key is "code" or "results" '''
