def play(self):
self.play_pause_button.SetBitmapLabel(
wx.BitmapFromImage(get_builtin_image('pause')))
self.play_pause_button.SetToolTipString("Pause")
self.previous_pauses_duration += time.time() - self.pause_start_time
self.pause_start_time = None
self.paused = False
def play(self):
self.play_pause_button.SetBitmapLabel(
wx.BitmapFromImage(get_builtin_image('pause')))
self.play_pause_button.SetToolTipString("Pause")
self.previous_pauses_duration += time.time() - self.pause_start_time
self.pause_start_time = None
self.paused = False
def get_cp_image():
"""The CellProfiler icon as a wx.Image"""
global cp_image
if cp_image is None:
cp_image = get_builtin_image('CellProfilerIcon')
return cp_image
def __init__(self, *args, **kwds):
if sys.platform.startswith("win"):
kwds["style"] = wx.DEFAULT_FRAME_STYLE | wx.STAY_ON_TOP
wx.Frame.__init__(self, *args, **kwds)
self.Show()
if wx.Platform == '__WXMAC__' and hasattr(self, 'MacGetTopLevelWindowRef'):
try:
from AppKit import NSWindow, NSApp, NSFloatingWindowLevel
window_ref = self.MacGetTopLevelWindowRef()
nsw = NSWindow.alloc().initWithWindowRef_(window_ref)
nsw.setLevel_(NSFloatingWindowLevel)
except ImportError:
print "No AppKit module => can't make progress window stay on top."
self.start_time = time.time()
self.end_times = None
self.current_module = None
self.pause_start_time = None
self.previous_pauses_duration = 0.
# GUI stuff
self.BackgroundColour = cellprofiler.preferences.get_background_color()
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cp_icon(), "CellProfiler2.0")
self.SetTitle("CellProfiler %s"%(version.title_string))
self.SetSize((640, 480))
self.panel = wx.Panel(self, wx.ID_ANY)
sizer = wx.BoxSizer(wx.VERTICAL)
times_sizer = wx.BoxSizer(wx.HORIZONTAL)
self.elapsed_control = wx.StaticText(self.panel, -1,
label=self.elapsed_label(),
style=wx.ALIGN_LEFT)
self.remaining_control = wx.StaticText(self.panel, -1,
label=self.remaining_label(),
style=wx.ALIGN_RIGHT)
times_sizer.Add(self.elapsed_control, 1, wx.ALIGN_LEFT | wx.ALL, 5)
times_sizer.Add(self.remaining_control, 1, wx.ALIGN_RIGHT | wx.ALL, 5)
sizer.Add(times_sizer, 0, wx.EXPAND)
self.gauge = wx.Gauge(self.panel, -1, style=wx.GA_HORIZONTAL)
self.gauge.SetValue(0)
self.gauge.SetRange(100)
sizer.Add(self.gauge, 0, wx.ALL | wx.EXPAND, 5)
self.image_set_control = wx.StaticText(self.panel, -1, label=image_set_label(None, None))
sizer.Add(self.image_set_control, 0, wx.LEFT | wx.RIGHT, 5)
self.current_module_control = wx.StaticText(self.panel, -1, label=module_label(None))
sizer.Add(self.current_module_control, 0, wx.LEFT | wx.RIGHT | wx.BOTTOM, 5)
buttons_sizer = wx.BoxSizer(wx.HORIZONTAL)
self.play_pause_button = wx.BitmapButton(self.panel, -1,
bitmap=wx.BitmapFromImage(get_builtin_image('pause')))
self.play_pause_button.SetToolTipString("Pause")
buttons_sizer.Add(self.play_pause_button, 0, wx.ALL, 5)
self.stop_button = wx.BitmapButton(self.panel, -1, bitmap=wx.BitmapFromImage(get_builtin_image('stop')))
self.stop_button.SetToolTipString("Stop")
buttons_sizer.Add(self.stop_button, 0, wx.ALL, 5)
save_bitmap = wx.ArtProvider.GetBitmap(wx.ART_FILE_SAVE,
wx.ART_CMN_DIALOG,
(16,16))
self.save_button = wx.BitmapButton(self.panel, -1, bitmap = save_bitmap)
self.save_button.SetToolTipString("Save measurements")
buttons_sizer.Add(self.save_button, 0, wx.ALL, 5)
sizer.Add(buttons_sizer, 0, wx.CENTER)
self.panel.SetSizer(sizer)
sizer.Fit(self)
# Timer that updates elapsed
timer_id = wx.NewId()
self.timer = wx.Timer(self.panel, timer_id)
self.timer.Start(500)
wx.EVT_TIMER(self.panel, timer_id, self.on_timer)
def pause(self):
self.play_pause_button.SetBitmapLabel(
wx.BitmapFromImage(get_builtin_image('play')))
self.play_pause_button.SetToolTipString("Resume")
self.pause_start_time = time.time()
self.paused = True
Website: http://www.cellprofiler.org
"""
import wx
from cellprofiler.icons import get_builtin_image
import cStringIO
import cellprofiler.preferences as cpp
from cellprofiler.gui.errordialog import display_error_dialog
import sys
# Make sure sys.excepthook is called for any uncaught exceptions, even in threads.
import cellprofiler.utilities.thread_excepthook
cellprofiler.utilities.thread_excepthook.install_thread_sys_excepthook()
CellProfilerSplash = get_builtin_image('CellProfilerSplash')
class CellProfilerApp(wx.App):
def __init__(self, *args, **kwargs):
# allow suppression of version checking (primarily for nosetests).
self.check_for_new_version = kwargs.pop('check_for_new_version', False)
self.show_splashbox = kwargs.pop('show_splashbox', False)
self.workspace_path = kwargs.pop('workspace_path', None)
self.pipeline_path = kwargs.pop('pipeline_path', None)
self.abort_initialization = False
super(CellProfilerApp, self).__init__(*args, **kwargs)
def OnInit(self):
# The wx.StandardPaths aren't available until this is set.
self.SetAppName('CellProfiler2.0')
Website: http://www.cellprofiler.org
"""
import wx
from cellprofiler.icons import get_builtin_image
import cStringIO
import cellprofiler.preferences as cpp
from cellprofiler.gui.errordialog import display_error_dialog
import sys
# Make sure sys.excepthook is called for any uncaught exceptions, even in threads.
import cellprofiler.utilities.thread_excepthook
cellprofiler.utilities.thread_excepthook.install_thread_sys_excepthook()
CellProfilerSplash = get_builtin_image('CellProfilerSplash')
class CellProfilerApp(wx.App):
def __init__(self, *args, **kwargs):
# allow suppression of version checking (primarily for nosetests).
self.check_for_new_version = kwargs.pop('check_for_new_version', False)
self.show_splashbox = kwargs.pop('show_splashbox', False)
self.workspace_path = kwargs.pop('workspace_path', None)
self.pipeline_path = kwargs.pop('pipeline_path', None)
self.abort_initialization = False
super(CellProfilerApp, self).__init__(*args, **kwargs)
def OnInit(self):
# The wx.StandardPaths aren't available until this is set.
from cellprofiler.utilities.version import dotted_version
self.SetAppName('CellProfiler%s' % dotted_version)
def get_cp_image():
"""The CellProfiler icon as a wx.Image"""
global cp_image
if cp_image is None:
cp_image = get_builtin_image('CellProfilerIcon')
return cp_image
def __init__(self, *args, **kwds):
if sys.platform.startswith("win"):
kwds["style"] = wx.DEFAULT_FRAME_STYLE | wx.STAY_ON_TOP
wx.Frame.__init__(self, *args, **kwds)
self.Show()
if wx.Platform == '__WXMAC__' and hasattr(self,
'MacGetTopLevelWindowRef'):
try:
from AppKit import NSWindow, NSApp, NSFloatingWindowLevel
window_ref = self.MacGetTopLevelWindowRef()
nsw = NSWindow.alloc().initWithWindowRef_(window_ref)
nsw.setLevel_(NSFloatingWindowLevel)
except ImportError:
print "No AppKit module => can't make progress window stay on top."
self.start_time = time.time()
self.end_times = None
self.current_module = None
self.pause_start_time = None
self.previous_pauses_duration = 0.
# GUI stuff
self.BackgroundColour = cellprofiler.preferences.get_background_color()
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cp_icon(), "CellProfiler2.0")
self.SetTitle("CellProfiler %s" % (version.title_string))
self.SetSize((640, 480))
self.panel = wx.Panel(self, wx.ID_ANY)
sizer = wx.BoxSizer(wx.VERTICAL)
times_sizer = wx.BoxSizer(wx.HORIZONTAL)
self.elapsed_control = wx.StaticText(self.panel,
-1,
label=self.elapsed_label(),
style=wx.ALIGN_LEFT)
self.remaining_control = wx.StaticText(self.panel,
-1,
label=self.remaining_label(),
style=wx.ALIGN_RIGHT)
times_sizer.Add(self.elapsed_control, 1, wx.ALIGN_LEFT | wx.ALL, 5)
times_sizer.Add(self.remaining_control, 1, wx.ALIGN_RIGHT | wx.ALL, 5)
sizer.Add(times_sizer, 0, wx.EXPAND)
self.gauge = wx.Gauge(self.panel, -1, style=wx.GA_HORIZONTAL)
self.gauge.SetValue(0)
self.gauge.SetRange(100)
sizer.Add(self.gauge, 0, wx.ALL | wx.EXPAND, 5)
self.image_set_control = wx.StaticText(self.panel,
-1,
label=image_set_label(
None, None))
sizer.Add(self.image_set_control, 0, wx.LEFT | wx.RIGHT, 5)
self.current_module_control = wx.StaticText(self.panel,
-1,
label=module_label(None))
sizer.Add(self.current_module_control, 0,
wx.LEFT | wx.RIGHT | wx.BOTTOM, 5)
buttons_sizer = wx.BoxSizer(wx.HORIZONTAL)
self.play_pause_button = wx.BitmapButton(
self.panel,
-1,
bitmap=wx.BitmapFromImage(get_builtin_image('pause')))
self.play_pause_button.SetToolTipString("Pause")
buttons_sizer.Add(self.play_pause_button, 0, wx.ALL, 5)
self.stop_button = wx.BitmapButton(self.panel,
-1,
bitmap=wx.BitmapFromImage(
get_builtin_image('stop')))
self.stop_button.SetToolTipString("Stop")
buttons_sizer.Add(self.stop_button, 0, wx.ALL, 5)
save_bitmap = wx.ArtProvider.GetBitmap(wx.ART_FILE_SAVE,
wx.ART_CMN_DIALOG, (16, 16))
self.save_button = wx.BitmapButton(self.panel, -1, bitmap=save_bitmap)
self.save_button.SetToolTipString("Save measurements")
buttons_sizer.Add(self.save_button, 0, wx.ALL, 5)
sizer.Add(buttons_sizer, 0, wx.CENTER)
self.panel.SetSizer(sizer)
sizer.Fit(self)
# Timer that updates elapsed
timer_id = wx.NewId()
self.timer = wx.Timer(self.panel, timer_id)
self.timer.Start(500)
wx.EVT_TIMER(self.panel, timer_id, self.on_timer)
def pause(self):
self.play_pause_button.SetBitmapLabel(
wx.BitmapFromImage(get_builtin_image('play')))
self.play_pause_button.SetToolTipString("Resume")
self.pause_start_time = time.time()
self.paused = True
__version__="$Revision$"
from StringIO import StringIO
import time
import base64
import math
import zlib
import wx
import sys
import cellprofiler.pipeline as cpp
import cellprofiler.gui.movieslider as cpgmov
from cellprofiler.gui.cpfigure import window_name, find_fig
from cellprofiler.icons import get_builtin_image
IMG_OK = get_builtin_image('IMG_OK')
IMG_ERROR = get_builtin_image('IMG_ERROR')
IMG_EYE = get_builtin_image('IMG_EYE')
IMG_CLOSED_EYE = get_builtin_image('IMG_CLOSED_EYE')
IMG_PAUSE = get_builtin_image('IMG_PAUSE')
IMG_GO = get_builtin_image('IMG_GO')
BMP_WARNING = wx.ArtProvider.GetBitmap(wx.ART_WARNING,size=(16,16))
NO_PIPELINE_LOADED = 'No pipeline loaded'
PADDING = 1
def plv_get_bitmap(data):
return wx.BitmapFromImage(data)
PAUSE_COLUMN = 0
EYE_COLUMN = 1
from StringIO import StringIO
import logging
import time
import base64
import math
import zlib
import wx
import sys
import cellprofiler.pipeline as cpp
import cellprofiler.gui.movieslider as cpgmov
from cellprofiler.gui.cpfigure import window_name, find_fig
from cellprofiler.icons import get_builtin_image
from cellprofiler.gui.moduleview import request_module_validation
IMG_OK = get_builtin_image('IMG_OK')
IMG_ERROR = get_builtin_image('IMG_ERROR')
IMG_EYE = get_builtin_image('IMG_EYE')
IMG_CLOSED_EYE = get_builtin_image('IMG_CLOSED_EYE')
IMG_PAUSE = get_builtin_image('IMG_PAUSE')
IMG_GO = get_builtin_image('IMG_GO')
BMP_WARNING = wx.ArtProvider.GetBitmap(wx.ART_WARNING, size=(16, 16))
NO_PIPELINE_LOADED = 'No pipeline loaded'
PADDING = 1
def plv_get_bitmap(data):
return wx.BitmapFromImage(data)
CPLD_ALPHA_VALUE = "alpha_value"
CPLD_LABELS = "labels"
CPLD_LINE_WIDTH = "line_width"
CPLD_MODE = "mode"
CPLD_NAME = "name"
CPLD_OUTLINE_COLOR = "outline_color"
CPLD_SHOW = "show"
EVT_NAV_MODE_CHANGE = wx.PyEventBinder(wx.NewEventType())
MATPLOTLIB_FILETYPES = ["png", "pdf"]
MATPLOTLIB_UNSUPPORTED_FILETYPES = []
MENU_CLOSE_ALL = wx.NewId()
MENU_CLOSE_WINDOW = wx.NewId()
MENU_FILE_SAVE = wx.NewId()
MENU_FILE_SAVE_TABLE = wx.NewId()
MENU_LABELS_ALPHA = {}
MENU_LABELS_LINES = {}
MENU_LABELS_OFF = {}
MENU_LABELS_OUTLINE = {}
MENU_LABELS_OVERLAY = {}
MENU_RGB_CHANNELS = {}
MENU_SAVE_SUBPLOT = {}
MENU_TOOLS_MEASURE_LENGTH = wx.NewId()
MODE_MEASURE_LENGTH = 2
MODE_NONE = 0
NAV_MODE_NONE = ""
NAV_MODE_PAN = "pan/zoom"
NAV_MODE_ZOOM = "zoom rect"
NAV_MODE_MEASURE = "measure"
BMP_MEASURE = wx.Bitmap(get_builtin_image("IMG_MEASURE"))
WINDOW_IDS = []