import os
from datetime import datetime
from cement import Controller, ex
from cement.utils import fs
from cement.utils.version import get_version_banner
from ..core.version import get_version
from ..core import exc
VERSION_BANNER = """
Lazily Backup Files and Directories %s
%s
""" % (get_version(), get_version_banner())
class Base(Controller):
class Meta:
label = 'base'
# text displayed at the top of --help output
description = 'Lazily Backup Files and Directories'
# text displayed at the bottom of --help output
epilog = 'Usage: dotbak /path/to/file'
# controller level arguments. ex: 'dotbak --version'
arguments = [
### add a version banner
(['-v', '--version'], {
'action': 'version',
'version': VERSION_BANNER
}),
from cement.utils.version import get_version_banner
from datetime import datetime
from pathlib import Path
from urllib.parse import urlparse
from xrdsst.core.definitions import ROOT_DIR
from xrdsst.core.conf_keys import validate_conf_keys, ConfKeysSecurityServer, ConfKeysRoot
from xrdsst.core.excplanation import Excplanatory
from xrdsst.core.util import op_node_to_ctr_cmd_text, get_admin_credentials, get_ssh_key, get_ssh_user
from xrdsst.core.version import get_version
from xrdsst.resources.texts import texts
from xrdsst.configuration.configuration import Configuration
from xrdsst.rest.rest import ApiException
BANNER = texts['app.description'] + ' ' + get_version(
) + '\n' + get_version_banner()
class BaseControllerException(Exception):
"""Exception raised for errors related to UserController.
Attributes:
message -- explanation of the error
"""
def __init__(self, message):
self.message = message
super().__init__(self.message)
class BaseController(Controller):
_TRANSIENT_API_KEY_ROLES = [
from cement import Controller, ex
from cement.utils.version import get_version_banner
from jinja2 import Environment, FileSystemLoader
from tabulate import tabulate
from ..core.version import get_version
VERSION_BANNER = """
Yager %s
%s
""" % (
get_version(),
get_version_banner(),
)
class Base(Controller):
""" Class implementing base app controller."""
class Meta:
"""Controller meta-data."""
label = "base"
description = "Yet Another GEneric Reporter tool for parsing of XML data into an SQLite database and subsequent universal reporting based on SQL queries and Jinja2 templates." # noqa: E501
epilog = "Usage: yager {sub-command} {options}"
arguments = [
(["-v", "--version"], {
from cement import Controller, ex
from cement.utils.version import get_version_banner
from ..core.version import get_version
VERSION_BANNER = """
A Simple TODO Application %s
%s
""" % (get_version(), get_version_banner())
class Base(Controller):
class Meta:
label = 'base'
# text displayed at the top of --help output
description = 'A Simple TODO Application'
# text displayed at the bottom of --help output
epilog = 'Usage: todo command1 --foo bar'
# controller level arguments. ex: 'todo --version'
arguments = [
### add a version banner
( [ '-v', '--version' ],
{ 'action' : 'version',
'version' : VERSION_BANNER } ),
]
def _default(self):
from cement import Controller
from cement.utils.version import get_version_banner
BANNER = get_version_banner()
class Base(Controller):
class Meta:
label = 'base'
description = 'Cement Framework Developer Tools'
epilog = 'Example: cement generate project /path/to/myapp'
arguments = [
(['-v', '--version'], {
'action': 'version',
'version': BANNER
}),
]
def _default(self):
self.app.args.print_help()
def __init__(self):
"""
A class to define the default configuration for cement apps
Attributes
----------
system : str
the name of the OS that's running the app
bng_name : str
OS appropriate name of the BNG folder
bng_path : str
full absolute path to the BNG folder
lib_path : str
path to CLI library
stdout : str
the name of the subprocess attribute to pass stdout to
stderr : str
the name of the subprocess attribute to pass stderr to
config : dict
dictionary containing the application defaults
banner : str
app banner that gets printed when ran with -v
"""
# determine what bng we are using
system = platform.system()
if system == "Linux":
bng_name = "bng-linux"
elif system == "Windows":
bng_name = "bng-win"
elif system == "Darwin":
bng_name = "bng-mac"
# set attributes
self.system = system
self.bng_name = bng_name
# configuration defaults
CONFIG = init_defaults("bionetgen")
lib_path = os.path.dirname(__file__)
lib_path = os.path.split(lib_path)[0]
CONFIG["bionetgen"]["bngpath"] = os.path.join(lib_path, bng_name)
# notebook
CONFIG["bionetgen"]["notebook"] = {}
CONFIG["bionetgen"]["notebook"]["path"] = os.path.join(
lib_path, "assets", "bionetgen.ipynb")
CONFIG["bionetgen"]["notebook"]["template"] = os.path.join(
lib_path, "assets", "bionetgen-temp.ipynb")
CONFIG["bionetgen"]["notebook"]["name"] = "bng-notebook.ipynb"
# cvode paths
CONFIG["bionetgen"]["cvode_lib"] = None
CONFIG["bionetgen"]["cvode_include"] = None
# set attributes
self.bng_path = os.path.join(lib_path, bng_name)
self.lib_path = lib_path
# version banner
VERSION_BANNER = """BioNetGen simple command line interface {}\nBioNetGen version: {}\n{}
""".format(get_version(), get_latest_bng_version(),
get_version_banner())
# set attributes
self.banner = VERSION_BANNER
# stdout
CONFIG["bionetgen"]["stdout"] = "PIPE"
CONFIG["bionetgen"]["stderr"] = "STDOUT"
self.stdout = subprocess.PIPE
self.stderr = subprocess.PIPE
self.config = CONFIG
