Python PipelineMapping.Counter Exemples

Exemple #1

def countTaggedReads(infiles, outfile):
    '''count number of reads in input files.'''
    to_cluster = True
    read1, read2 = infiles
    m = PipelineMapping.Counter()
    statement = m.build((read1, ), outfile)
    P.run()

Exemple #2

def countReads(infile, outfile):
    '''count number of reads in input files.'''
    to_cluster = True
    m = PipelineMapping.Counter()
    statement = m.build((infile, ), outfile)
    P.run()