Exemple #1
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def build_report():
    '''build report from scratch.

    Any existing report will be overwritten.
    '''

    E.info("starting report build process from scratch")
    run_report(clean=True)
Exemple #2
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def build_report():
    '''build report from scratch.'''
    if len(os.listdir("multiqc_data") ) == 0:
        E.info("starting documentation build process from scratch")
        run_report(clean=True)
        os.rmdir("report")
    else:
        pass
def build_report():
    '''build report from scratch.

    Any existing report will be overwritten.
    Currently report function is not active for this pipeline
    '''

    E.info("starting report build process from scratch")
    run_report(clean=True)
Exemple #4
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def update_report():
    '''update report.

    This will update a report with any changes inside the report
    document or code. Note that updates to the data will not cause
    relevant sections to be updated. Use the cgatreport-clean utility
    first.
    '''

    E.info("updating report")
    run_report(clean=False)
Exemple #5
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def update_report():
    '''update report.'''
    E.info("updating documentation")
    run_report(clean=False)
Exemple #6
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def build_report():
    '''build report from scratch.'''
    E.info("starting documentation build process from scratch")
    run_report(clean=True)
def update_report():
    '''update report.'''

    E.info("updating report")
    run_report(clean=False)