def wrapup():
"""Summarize results once all are done."""
import matplotlib as mpl
import matplotlib.pyplot as plt
mpl.use("agg")
gt = np.load("gt.npy")
agg = np.load("agg.npy")
summarize(gt, agg)
plt.savefig("summary.png")
def hdfcaching():
"""Auto-cache/save results to HDF."""
import os
import tables as pt
from cgp.utils.hdfcache import Hdfcache
filename = "/home/jonvi/hdfcache.h5"
hdfcache = Hdfcache(filename)
pipeline = [hdfcache.cache(i) for i in gt2par, par2ph, ph2agg]
with hdfcache:
for i in genotypes:
for func in pipeline:
i = func(i)
with pt.openFile(filename) as f:
gt = f.root.gt2par.input[:]
agg = f.root.ph2agg.output[:]
summarize(gt, agg)
os.system("h5ls -r " + filename)