def copyFromCasp2CcpnArchive():
inputDir = '/Users/jd/CASP-NMR-CING/caspNmrDbDivided'
os.chdir(inputDir)
for entryCode in entryList:
# for entryCode in entryList[0:1]:
ch23 = entryCode[1:3]
for city in predList:
# for city in cityList[0:1]:
entryCodeNew = entryCode + city
nTmessage("Working on: %s" % entryCodeNew)
inputEntryDir = os.path.join(inputDir, ch23, entryCodeNew)
outputEntryDir = os.path.join(dataDir, ch23, entryCodeNew)
inputAuthorDir = os.path.join(outputEntryDir, 'Author')
outputNijmegenDir = os.path.join(outputEntryDir, 'Nijmegen')
if not os.path.exists(inputAuthorDir):
mkdirs(inputAuthorDir)
if not os.path.exists(outputNijmegenDir):
mkdirs(outputNijmegenDir)
# prevent junk
patternList = "*.pdb *.upl *.aco *.tbl".split()
fnList = globMultiplePatterns(inputEntryDir, patternList)
for fn in fnList:
orgFn = os.path.join(inputEntryDir, fn)
# nTmessage("Copying from %s" % fn)
# fnBaseName = os.path.basename(fn)
dstFn = os.path.join(inputAuthorDir, fn)
nTmessage("Copying from %s to %s" % (orgFn, dstFn))
copy(orgFn, dstFn)
def copyFromCasp2CcpnArchive():
inputDir = '/Users/jd/CASP-NMR-CING/caspNmrDbDivided'
os.chdir(inputDir)
for entryCode in entryList:
# for entryCode in entryList[0:1]:
ch23 = entryCode[1:3]
for city in predList:
# for city in cityList[0:1]:
entryCodeNew = entryCode + city
nTmessage("Working on: %s" % entryCodeNew)
inputEntryDir = os.path.join(inputDir, ch23, entryCodeNew)
outputEntryDir = os.path.join(dataDir, ch23, entryCodeNew)
inputAuthorDir = os.path.join(outputEntryDir, 'Author')
outputNijmegenDir = os.path.join(outputEntryDir, 'Nijmegen')
if not os.path.exists(inputAuthorDir):
mkdirs(inputAuthorDir)
if not os.path.exists(outputNijmegenDir):
mkdirs(outputNijmegenDir)
# prevent junk
patternList = "*.pdb *.upl *.aco *.tbl".split()
fnList = globMultiplePatterns(inputEntryDir, patternList)
for fn in fnList:
orgFn = os.path.join(inputEntryDir, fn)
# nTmessage("Copying from %s" % fn)
# fnBaseName = os.path.basename(fn)
dstFn = os.path.join(inputAuthorDir, fn)
nTmessage("Copying from %s to %s" % (orgFn, dstFn))
copy(orgFn, dstFn)
def copyFromCasdNmr2CcpnArchive():
#inputDir = '/Users/jd/CASD-NMR-CING/casdNmrDbDivided'
programHoH = convertToProgram(participationTable)
os.chdir(inputDir)
for entryCode in entryList:
# for entryCode in entryList[0:1]:
ch23 = entryCode[1:3]
for city in cityList:
# for city in cityList[0:1]:
entryCodeNew = entryCode + city
programId = getDeepByKeys(programHoH, entryCode, city)
if not (city == 'Test' or programId):
# nTdebug("Skipping %s" % entryCodeNew)
continue
# else:
# nTdebug("Looking at %s" % entryCodeNew)
# continue # TODO disable premature stop.
nTmessage("Working on: %s" % entryCodeNew)
inputEntryDir = os.path.join(inputDir, ch23, entryCodeNew)
outputEntryDir = os.path.join(dataDir, ch23, entryCodeNew)
inputAuthorDir = os.path.join(outputEntryDir, 'Author')
outputNijmegenDir = os.path.join(outputEntryDir, 'Nijmegen')
if not os.path.exists(inputAuthorDir):
mkdirs(inputAuthorDir)
if not os.path.exists(outputNijmegenDir):
mkdirs(outputNijmegenDir)
# prevent junk
patternList = "*.pdb *.upl *.aco *.tbl".split()
fnList = globMultiplePatterns(inputEntryDir, patternList)
for fn in fnList:
orgFn = os.path.join(inputEntryDir, fn)
# nTmessage("Copying from %s" % fn)
# fnBaseName = os.path.basename(fn)
dstFn = os.path.join(inputAuthorDir, fn)
nTmessage("Copying from %s to %s" % (orgFn, dstFn))
copy(orgFn, dstFn)
def copyFromCasdNmr2CcpnArchive():
#inputDir = '/Users/jd/CASD-NMR-CING/casdNmrDbDivided'
programHoH = convertToProgram(participationTable)
os.chdir(inputDir)
for entryCode in entryList:
# for entryCode in entryList[0:1]:
ch23 = entryCode[1:3]
for city in cityList:
# for city in cityList[0:1]:
entryCodeNew = entryCode + city
programId = getDeepByKeys(programHoH, entryCode, city)
if not (city == 'Test' or programId):
# nTdebug("Skipping %s" % entryCodeNew)
continue
# else:
# nTdebug("Looking at %s" % entryCodeNew)
# continue # TODO disable premature stop.
nTmessage("Working on: %s" % entryCodeNew)
inputEntryDir = os.path.join(inputDir, ch23, entryCodeNew)
outputEntryDir = os.path.join(dataDir, ch23, entryCodeNew)
inputAuthorDir = os.path.join(outputEntryDir, 'Author')
outputNijmegenDir = os.path.join(outputEntryDir, 'Nijmegen')
if not os.path.exists(inputAuthorDir):
mkdirs(inputAuthorDir)
if not os.path.exists(outputNijmegenDir):
mkdirs(outputNijmegenDir)
# prevent junk
patternList = "*.pdb *.upl *.aco *.tbl".split()
fnList = globMultiplePatterns(inputEntryDir, patternList)
for fn in fnList:
orgFn = os.path.join(inputEntryDir, fn)
# nTmessage("Copying from %s" % fn)
# fnBaseName = os.path.basename(fn)
dstFn = os.path.join(inputAuthorDir, fn)
nTmessage("Copying from %s to %s" % (orgFn, dstFn))
copy(orgFn, dstFn)
