def runAbunch():
#1hkt 4046 not in NRG
#2rop many errors; what remained?
#Good: 1brv 1cjg 1d3z 1ieh
# OK (only 1 chain done) 1cjg 1hue 2jmx 1iv6 2kib
# cp $CINGROOT/Tests/data/ccpn/$x.tgz .
# scp -r nmr:/Library/WebServer/Documents/NRG-CING/recoordSync/$x $D/NRG-CING/recoordSync
# scp -r nmr:/Users/jd/wattosTestingPlatform/bmrb/ftp.bmrb.wisc.edu/pub/bmrb/entry_directories/bmr$y .
_comboList = '''
1brv 4020
1cjg 4813
1d3z 6457
1hue 4047
1ieh 4969
1iv6 5317
2rop 11041
2jmx 15072
2kz0 16995
2kib 20074
'''.split()
comboList = '''
2kib 20074
'''.split()
comboListCount = len(comboList) / 2
for i in range(comboListCount):
idxX = i * 2
idxY = idxX + 1
x = comboList[idxX]
y = comboList[idxY]
try:
status = annotateEntry(x, y)
except:
nTtracebackError()
status = True
finally:
nTmessage(getStopMessage(cing.starttime))
if status:
nTerror("Failed to annotateEntry for arguments: %s" %
str(sys.argv))
def runAbunch():
#1hkt 4046 not in NRG
#2rop many errors; what remained?
#Good: 1brv 1cjg 1d3z 1ieh
# OK (only 1 chain done) 1cjg 1hue 2jmx 1iv6 2kib
# cp $CINGROOT/Tests/data/ccpn/$x.tgz .
# scp -r nmr:/Library/WebServer/Documents/NRG-CING/recoordSync/$x $D/NRG-CING/recoordSync
# scp -r nmr:/Users/jd/wattosTestingPlatform/bmrb/ftp.bmrb.wisc.edu/pub/bmrb/entry_directories/bmr$y .
_comboList = '''
1brv 4020
1cjg 4813
1d3z 6457
1hue 4047
1ieh 4969
1iv6 5317
2rop 11041
2jmx 15072
2kz0 16995
2kib 20074
'''.split()
comboList = '''
2kib 20074
'''.split()
comboListCount = len(comboList)/2
for i in range(comboListCount):
idxX = i*2
idxY = idxX + 1
x = comboList[idxX]
y = comboList[idxY]
try:
status = annotateEntry(x,y)
except:
nTtracebackError()
status = True
finally:
nTmessage(getStopMessage(cing.starttime))
if status:
nTerror("Failed to annotateEntry for arguments: %s" % str( sys.argv))
else:
nTmessage("Failed to find structureEnsemble; skipping swapCheck")
else:
nTmessage("Failed to find nmrConstraintStore; skipping swapCheck")
# constraintsHandler.swapCheck(nmrConstraintStore, structureEnsemble, numSwapCheckRuns)
if doSaveProject:
# nTmessage('Checking validity and saving to new path')
nTmessage('Saving to new path: %s' % entryCodeNew)
# checkValid=True,
saveProject(ccpnProject, newPath=entryCodeNew, removeExisting=True)
if doExport:
tarPath = os.path.join(entryDir, entryCodeNew + ".tgz")
if os.path.exists(tarPath):
nTmessage("Overwriting: " + tarPath)
myTar = tarfile.open(tarPath, mode='w:gz') # overwrites
myTar.add(entryCodeNew)
myTar.close()
if guiRoot:
guiRoot.destroy()
# end def
if __name__ == "__main__":
cing.verbosity = cing.verbosityDebug
try:
status = annotateEntry(*sys.argv[1:])
except:
nTtracebackError()
finally:
nTmessage(getStopMessage(cing.starttime))
