def GenCatalogEntry(row):
i_deps = cjson.decode(row[7])
if i_deps:
i_deps_str = "|".join(i_deps)
else:
i_deps_str = "none"
deps_with_desc = cjson.decode(row[6])
deps = [x[0] for x in deps_with_desc if x[0].startswith('CSW')]
if deps:
deps_str = '|'.join(deps)
else:
deps_str = "none"
entry = representations.CatalogEntry(
catalogname=row[0], # 0
version=row[1], # 1
pkgname=row[2], # 2
basename=row[3], # 3
md5_sum=row[4], # 4
size=str(row[5]), # 5
deps=deps_str, # 6
category="none", # 7
i_deps=i_deps_str, # 8
desc=row[8], # 9
)
return entry
def transform_graph(self):
"""
This function transform ids to corresponding screen_name in the user_graph.txt file
"""
f = open("../semantic_analysis/data/labelled_user_dic_393.json", "r")
user_dic = cjson.decode(f.readline())
f.close()
f = open("../semantic_analysis/data/labelled_id_name_map_393.json", "r")
id_label_map = cjson.decode(f.readline())
f.close()
node_list, edge_list = self.read_node_edge_lists("user_graph/user_graph_393_2.txt")
f = open("user_graph/user_graph_393_screen_name_2.txt","w")
f.write("#nodes-screen_name\n")
for user in user_dic:
f.write(user+" "+user_dic[user]["label"]+"\n")
f.write("#edges-screen_name\n")
for edge in edge_list:
edge_with_name = []
flag = 0
for node in edge:
if id_label_map.has_key(node):
edge_with_name.append(id_label_map[node]["screen_name"])
else:
flag = 1
break
if flag == 0:
f.write(edge_with_name[0]+" "+edge_with_name[1]+"\n")
f.close()
def json_parser(source, logger=None):
"""
JSON parser based on json module. It accepts either source
descriptor with .read()-supported file-like object or
data as a string object.
"""
if isinstance(source, InstanceType) or isinstance(source, file):
# got data descriptor
try:
jsondict = cjson.decode(source.read())
except Exception as exc:
print_exc(exc)
source.close()
raise
source.close()
else:
data = source
# to prevent unicode/ascii errors like
# UnicodeDecodeError: 'utf8' codec can't decode byte 0xbf in position
# if isinstance(data, str):
# data = unicode(data, errors='ignore')
# res = data.replace('null', '\"null\"')
#else:
res = data
try:
jsondict = cjson.decode(res)
except:
msg = "json_parser, WARNING: fail to JSON'ify data:"
msg += "\n%s\ndata type %s" % (res, type(res))
if logger:
logger.warning(msg)
else:
print msg
jsondict = eval(res, { "__builtins__": None }, {})
yield jsondict
def test_31_exports(self):
# public key
(resp, data) = self.client.request('GET', '/openssl_export', {'name': 'usercert1.pub'})
self.assertEqual(resp.status, 200)
try:
data = cjson.decode(data)
except Exception:
fail('cannot decode cjson data')
self.assertTrue(data.startswith('-----BEGIN PUBLIC KEY-----'))
# private key
(resp, data) = self.client.request('GET', '/openssl_export', {'name': 'usercert1.key'})
self.assertEqual(resp.status, 200)
try:
data = cjson.decode(data)
except Exception:
fail('cannot decode cjson data')
self.assertFalse(data.startswith('-----BEGIN PUBLIC KEY-----'))
# limit cases
# . no name
(resp, data) = self.client.request('GET', '/openssl_export', {})
self.assertEqual(resp.status, 400)
# . file not found
(resp, data) = self.client.request('GET', '/openssl_export', {'name': 'foo.bar'})
self.assertEqual(resp.status, 404)
def process_user_graph():
f = open("../user_dic/user_dic_09_wids_2.json","r")
user_dic = cjson.decode(f.readline())
user_ids = set()
for user in user_dic:
user_ids.add(str(user_dic[user]["id"]))
print len(user_dic)
print len(user_ids)
f.close()
fo = open("../social_graph/graph_reduced.txt","w")
fo.write("#nodes\n")
#for user in user_dic:
# fo.write(str(user_dic[user]["id"])+"\n")
for user in user_ids:
fo.write(user+"\n")
fo.write("#edges\n")
f = gzip.open("../social_graph/user_friends_09_total.json.gz")
user_friends = cjson.decode(f.readline())
print len(user_friends)
for user in user_friends:
if user in user_ids:
for friend in user_friends[user]:
if str(friend) in user_ids:
fo.write(user+" "+str(friend)+"\n")
else:
pass
f.close()
fo.close()
def pre_process():
"""
Dump user friends for whole month for September
"""
user_friends = {}
f = gzip.open("../social_graph/user_friends_09.json.gz", "r")
for line in f:
data = cjson.decode(line)
for key in data:
if not user_friends.has_key(key):
user_friends.update({key : data[key]})
else:
pass
f.close()
f = gzip.open("../social_graph/user_friends_09_2.json.gz", "r")
for line in f:
data = cjson.decode(line)
for key in data:
if not user_friends.has_key(key):
user_friends.update({key : data[key]})
else:
pass
f.close()
f = gzip.open("../social_graph/user_friends_09_total.json.gz","w")
json.dump(user_friends, f)
f.close()
def mqCallback(self, channel, method_frame, header_frame, body):
try:
if not self.zk.is_proxy_master():
return
# master's business
data_dict = cjson.decode(body)
# ** MUST ** ack
channel.basic_ack(method_frame.delivery_tag)
utils.log(utils.cur(), body, data_dict)
if not isinstance(data_dict, dict):
return
for db, forbid in data_dict.iteritems():
if not forbid[Forbid.KEY_TYPE] in (Forbid.FORBID_WORKING, Forbid.FORBID_FOREVER):
return
forbid[Forbid.KEY_START] = time.time()
path = os.path.join(ZKConf.ZK_PATH_FORBID, db)
orig = self.get_path(path)
if orig is False:
self.zk.mknode(path, cjson.encode(forbid))
else:
old = cjson.decode(orig)
if (
old[Forbid.KEY_TYPE] == forbid[Forbid.KEY_TYPE]
and old[Forbid.KEY_TYPE] == Forbid.FORBID_WORKING
and old[Forbid.KEY_START] + old[Forbid.KEY_DURATION] > time.time()
):
utils.log(utils.cur(), "still forbidding")
else:
utils.log(utils.cur(), "change forbid")
# change /database/forbid/db
self.forbidinfo[db] = forbid
self.zk.set(path, cjson.encode(forbid))
except Exception, err:
utils.err(utils.cur(), err)
def _eval_response(self,r):
#print '_eval_response r',r
try:
json = decode(r)
except DecodeError:
# This is for the case of, e.g.,
# {"status":"Ok.","response":{1:"I1\n."}}
# where cjson won't let us use 1 as a key.
import re
p = re.compile('\{(\d+)\:')
for m in p.finditer(r):
r = r.replace(m.group(0),'{"n%s":' % m.group(1))
#print '_eval_response r modified',r
json = decode(r)
if json.get('status') == 'Ok.':
d = {}
pairs = json.get('response',"NULL.")
#if not pairs in ["NULL.","PONG."]:
if isinstance(pairs,dict):
for k,v in pairs.items():
d[self._if_numeric(k)] = self._loads(v)
if d.keys():
json['response'] = d
else:
json['response'] = pairs
return json
def main():
n_sample=0
filteredData = open(FILTERED_DATA_PATH_JSON,'r')
for line in filteredData: #parsing tweets data file to generate a graph by adding edges
data = cjson.decode(line)
n_sample+=1
if data["postId"] not in GlobalPostUserDict:
GlobalPostUserDict[data["postId"]]=data["ownerUserId"]
accumulateTags(data["tags"])
n_feature=len(GlobalTagList)
global clusterData
clusterData=np.zeros(shape=(n_sample,n_feature), dtype=float)
labels=[]
sampleId=0
filteredData = open(FILTERED_DATA_PATH_JSON,'r')
for line in filteredData: #parsing tweets data file to generate a graph by adding edges
data = cjson.decode(line)
labels.append(data["postId"])
processrecord(data,sampleId)
sampleId+=1
clustersize=100
createKcluster(clusterData,clustersize,len(labels),labels)
def prediction_by_major_topic(self,rulelistfile,ground_truth_file,user_tag_dict_file,tfd,cosine):
#def prediction_by_strong_rule(self,rulelistfile,ground_truth_file,user_tag_dict_file):
#order the rules of existing tag in decreasing order in one list.
user_tag_dict={}
ground_truth=defaultdict(dict)
rule_by=defaultdict(list)
rule_by1=defaultdict(dict)
#candidate=[]
for line in open(user_tag_dict_file,'r'):
line=cjson.decode(line)
user_tag_dict[line[0]]=line[1]
for line in open(ground_truth_file,'r'):
line=cjson.decode(line)
ground_truth[line[0]]=line[1]
for line in open(rulelistfile,'r'):
line=cjson.decode(line)
if line[2]>0.5:
rule_by[line[0]].append(line)
rule_by1[line[0]][line[1]]=line[2]
tagfile=open(tfd,'r')
tfd=cjson.decode(tagfile.readline())
cosine=open(cosine,'r')
cosine=cjson.decode(cosine.readline())
# if line[0] in ground_truth and line[1] not in groud_truth and line[2]>0.5:
# rule_by[line[0]].append(line)
#candidate.append(line[1])
#for key in rule_by:
# rule_by[key]=sorted(rule_by[key],key=itemgetter(2),reverse=1)
#print rule_by[1]
cnt=0
cntt=0
cntp=0
for user,utd in user_tag_dict.iteritems():
candidate=[]
for key in utd:
for rule in rule_by[key]:
if rule[1] not in utd:
candidate.append([rule[0],rule[1]])
canscore=[]
for can in candidate:
score=0
for item in utd:
cosinev=cosine.get(can+'_'+item,0)
cosineq=cosine.get(item+'_'+can,0)
score+=(cosinev+consineq)*log(utd[item])
#lets use sum(sim(k,j)*log(f(j)))
canscore.append([can[1],score])
#print canscore
#print ground_truth[user]
if canscore!=[]:
tag=sorted(canscore,key=itemgetter(1),reverse=1)[0]
#print tag
cnt+=1
if tag[0] in ground_truth[user]:
cntt+=1
cntp+=ground_truth[user][tag[0]]
print cnt,cntt,cntp
def decode(data):
if not data:
return data
# return json.loads(data)
try:
return cjson.decode(data, encoding='utf-8')
except cjson.DecodeError:
return cjson.decode(data)
def thrash_cjson():
for obj, tns, json, msh in TESTS:
if TEST_DUMP_ONLY:
cjson.encode(obj)
elif TEST_LOAD_ONLY:
assert cjson.decode(json) == obj
else:
assert cjson.decode(cjson.encode(obj)) == obj
def webPlaylist():
"""
Choose the next song, given a current song and a list of forbidden songs
"""
seeds = json.decode(flask.request.form.get("seeds", ""))
not_list = json.decode(flask.request.form.get("not_list", ""))
return json.encode(playlist.nextSong(seeds, not_list))
def __call__(self, value=None):
if value is None or value == '':
raise ValidationError(message=self.message, code=self.code)
import cjson
try:
cjson.decode(value)
except:
raise ValidationError(message=self.message, code=self.code)
def iterateJsonFromFile(file, remove_params_dict=False):
for line in open(file):
try:
if not remove_params_dict: yield cjson.decode(line)
else:
data = cjson.decode(line)
if 'PARAMS_DICT' not in data: yield data
except: pass
def main(prefix, date):
json = open(os.path.join(json_path, '%s_%s.json' % (prefix, date)))
pos = open(os.path.join(json_path, '%s_positions.json' % prefix))
timestamp, nodes, ways, rels, tags = cjson.decode(json.readline())
positions = cjson.decode(pos.readline())
make_pickles(prefix, date, nodes, ways, rels, tags, positions)
def webPlaylist():
'''
Choose the next song, given a current song and a list of forbidden songs
'''
seeds = json.decode(flask.request.form.get('seeds', ''))
not_list = json.decode(flask.request.form.get('not_list', ''))
return json.encode(playlist.nextSong(seeds, not_list))
def prediction_by_strong_rule_of_most_voted_tag(self,rulelistfile,ground_truth_file,user_tag_dict_file):
#order the rules for each tag in a list of list
user_tag_dict={}
ground_truth=defaultdict(dict)
rule_by_tag=defaultdict(list)
for line in open(user_tag_dict_file,'r'):
line=cjson.decode(line)
user_tag_dict[line[0]]=line[1]
for line in open(ground_truth_file,'r'):
line=cjson.decode(line)
ground_truth[line[0]]=line[1]
for line in open(rulelistfile,'r'):
line=cjson.decode(line)
if line[2]>0.5:
rule_by_tag[line[0]].append(line)
for key in rule_by_tag:
rule_by_tag[key]=sorted(rule_by_tag[key],key=itemgetter(2),reverse=1)
cnt=0
cntt=0
cntp=0
for user,utd in user_tag_dict.iteritems():
#print user
#if user==34272713:
# print utd
utd1=sorted(utd.items(),key=itemgetter(1),reverse=1)
found=False
while found==False:
for item in utd1:
if item[0] in rule_by_tag:
rules=rule_by_tag[item[0]]
for rule in rules:
if rule[1] not in utd:
#print user,rule[1]
cnt+=1
if rule[1] in ground_truth[user]:
cntt+=1
cntp+=ground_truth[user][rule[1]]
#if user=='34272713':
#print user,rule
else:
#if user==61521908:
# print utd
#print user,rule,ground_truth[user]
pass
found=True
break
else:
continue
if found==True:
break
else:
continue
break
print cnt,cntt,cntp
def hasDifference(self, account, local_json, remote_json, icloud=False):
changed_keys = set()
BlinkLogger().log_debug(u"Computing differences from iCloud for %s" % account.id)
try:
local_data = cjson.decode(local_json)
except TypeError:
return True
try:
remote_data = cjson.decode(remote_json)
except TypeError:
return True
differences = DictDiffer(local_data, remote_data)
diffs = 0
for e in differences.changed():
if e in self.skip_settings:
continue
BlinkLogger().log_debug('Setting %s has changed' % e)
changed_keys.add(e)
diffs += 1
for e in differences.added():
if e in self.skip_settings:
continue
BlinkLogger().log_debug('Setting %s has been added' % e)
if not local_data.has_key(e):
BlinkLogger().log_debug('Remote added')
elif not remote_data.has_key(e):
BlinkLogger().log_debug('Local added')
changed_keys.add(e)
diffs += 1
for e in differences.removed():
if e in self.skip_settings:
continue
BlinkLogger().log_debug('Setting %s has been removed' % e)
if not local_data.has_key(e):
BlinkLogger().log_debug('Local removed')
if not remote_data.has_key(e):
BlinkLogger().log_debug('Remote removed')
changed_keys.add(e)
diffs += 1
if diffs and icloud:
self.notification_center.post_notification("iCloudStorageDidChange", sender=self, data=NotificationData(account=account.id, changed_keys=changed_keys))
return bool(diffs)
def construct_directed_graph_from_rules(rules_file,tagfreqdict):
graph=defaultdict(dict)
tagfreqdict=cjson.decode(tagfreqdict.readline())
for rule in rules_file:
rule = cjson.decode(rule)
if rule[2]>0.3:
graph[rule[1]][rule[0]]=-rule[2]
for tag in tagfreqdict:
graph['ROOT'][tag]=-0.1
return graph
def store_document(storage, index, document):
cluster_index = str(int(index[0:2], 16))
# to check the validity of the document on write
if CHECK_VALID_JSON_DOCUMENT:
json.decode(document)
fh = open(os.path.join(storage, cluster_index, index), "wb")
# simple os lock system
#fcntl.lockf(fh, fcntl.LOCK_EX)
fh.write(document)
fh.close()
def test_join_pool(self):
req = join_pool_request('127.0.1.1:8080', '127.0.1.1:8081')
data = urllib2.urlopen(req)
self.assertEqual(
cjson.decode(data.read()),
[
{"index": 0, "state": "pooling", "address": "127.0.1.1:8081"},
{"index": 1, "state": "pooling", "address": "127.0.1.1:8080"}
]
)
req = get_pool_request('127.0.0.1:8081')
data = urllib2.urlopen(req)
self.assertEqual(
cjson.decode(data.read()),
[
{"index": 0, "state": "pooling", "address": "127.0.1.1:8081"},
{"index": 1, "state": "pooling", "address": "127.0.1.1:8080"}
]
)
req = get_pool_request('127.0.0.1:8080')
data = urllib2.urlopen(req)
self.assertEqual(
cjson.decode(data.read()),
[
{"index": 0, "state": "pooling", "address": "127.0.1.1:8081"},
{"index": 1, "state": "pooling", "address": "127.0.1.1:8080"}
]
)
req = join_pool_request('127.0.1.1:8082', '127.0.1.1:8081')
data = urllib2.urlopen(req)
self.assertEqual(
cjson.decode(data.read()),
[
{"index": 0, "state": "pooling", "address": "127.0.1.1:8081"},
{"index": 1, "state": "pooling", "address": "127.0.1.1:8080"},
{"index": 2, "state": "pooling", "address": "127.0.1.1:8082"}
]
)
req = get_pool_request('127.0.0.1:8081')
data = urllib2.urlopen(req)
self.assertEqual(
cjson.decode(data.read()),
[
{"index": 0, "state": "pooling", "address": "127.0.1.1:8081"},
{"index": 1, "state": "pooling", "address": "127.0.1.1:8080"},
{"index": 2, "state": "pooling", "address": "127.0.1.1:8082"}
]
)
def test_30_getinfos(self):
# CA
(resp, data) = self.client.request('GET', '/openssl_certificateinfos',
{'name': 'catest1.crt'})
self.assertEqual(resp.status, 200)
try:
data = cjson.decode(data)
except Exception:
fail('cannot decode cjson data')
self.assertEqual(data['CA'] , 1)
self.assertEqual(data['length'], 1024)
# self-signed certificate
(resp, data) = self.client.request('GET', '/openssl_certificateinfos',
{'name': 'usercert1.pem'})
self.assertEqual(resp.status, 200)
try:
data = cjson.decode(data)
except Exception:
fail('cannot decode cjson data')
for k in ('sn','CA','length','fingerprint','validity-start','validity-end','subject','issuer'):
self.assertTrue(k in data)
for k in ('C','CN','L','O','OU','ST','emailAddress'):
self.assertTrue(k in data['subject'])
self.assertTrue(k in data['issuer'])
self.assertEqual(data['CA'] , 0)
self.assertEqual(data['length'], 432)
self.assertEqual(data['subject']['CN'], 'wiki.xivo.com')
# CA-signed certificat
(resp, data) = self.client.request('GET', '/openssl_certificateinfos',
{'name': 'usercert4.crt'})
self.assertEqual(resp.status, 200)
try:
data = cjson.decode(data)
except Exception:
fail('cannot decode cjson data')
self.assertEqual(data['CA'] , 0)
self.assertNotEqual(data['subject']['emailAddress'], data['issuer']['emailAddress'])
# limit cases
# . file do not exists
(resp, data) = self.client.request('GET', '/openssl_certificateinfos',
{'name': 'foo'})
self.assertEqual(resp.status, 404)
def measureDecoderThroughput(data):
json=cjson.encode(data)
bytes=0
st=time.time()
cnt=0
while True:
dt=time.time()-st
if dt>=0.5 and cnt>9: break
cjson.decode(json)
bytes+=len(json)
cnt+=1
return int(math.floor(bytes/dt/1024.0+0.5))
def testDecoderExtension(self):
re_date=re.compile('^new\sDate\(Date\.UTC\(.*?\)\)')
def dateDecoder(json,idx):
json=json[idx:]
m=re_date.match(json)
if not m: raise 'cannot parse JSON string as Date object: %s'%json[idx:]
args=cjson.decode('[%s]'%json[18:m.end()-2])
dt=datetime.date(*args)
return (dt,m.end())
self.assertEqual(cjson.decode('[1, new Date(Date.UTC(2007,1,2)), 2]', extension=dateDecoder), [1,datetime.date(2007,1,2),2])
self.assertEqual(cjson.decode('[1, new Date(Date.UTC( 2007, 1 , 2 )) , 2]', extension=dateDecoder), [1,datetime.date(2007,1,2),2])
self.assertRaises(cjson.DecodeError, lambda: cjson.decode('1', extension=0))
def get_field_data_form_json(json_data,field_list=[]):
if len(field_list) == 0:
return cjson.decode(json_data)
else:
try:
data = cjson.decode(json_data)
except:
data = {}
temp_data = {}
for i in data:
if i in field_list:
temp_data[i] = data[i]
return temp_data
def GET(self, md5_sum):
try:
cat_gen_data = models.CatalogGenData.selectBy(md5_sum=md5_sum).getOne()
except sqlobject.main.SQLObjectNotFound:
raise web.notfound("RestSvr4CatalogData for %r not found" % md5_sum)
simple_data = {
'deps': cjson.decode(cat_gen_data.deps),
'i_deps': cjson.decode(cat_gen_data.i_deps),
'pkginfo_name': cat_gen_data.pkginfo_name,
'pkgname': cat_gen_data.pkgname,
}
response = cjson.encode(simple_data)
web.header('Content-Length', str(len(response)))
return response
def testMultikeyGet(self):
"""Make a temp view."""
be1 = CouchStub()
be1_request = be1.expect_POST("/funstuff0/_all_docs?include_docs=true")
be1_request.reply(200, dict(
total_rows=2,
offset=0,
rows=[
{"id":"a", "key":"a", "value": {"rev":"2"},"doc":"b"},
{"id":"c", "key":"c", "value": {"rev":"3"},"doc":"d"}
]))
be1.listen("localhost", 23456)
be2 = CouchStub()
be2_request = be2.expect_POST("/funstuff1/_all_docs?include_docs=true")
be2_request.reply(200, dict(
total_rows=2,
offset=0,
rows=[
{"id":"b", "key":"b", "value": {"rev":"7"},"doc":"z"},
{"id":"y", "key":"y", "value": {"rev":"9"},"doc":"w"}
]))
be2.listen("localhost", 34567)
resp = post("http://localhost:22008/funstuff/_all_docs?include_docs=true", body={"keys":["a","c","x","y"]})
be1.verify()
be2.verify()
be1_post = cjson.decode(be1_request.input_body)
be2_post = cjson.decode(be2_request.input_body)
def lounge_hash(x):
crc = zlib.crc32(x,0)
return (crc >> 16)&0x7fff
keys1 = be1_post['keys']
keys2 = be2_post['keys']
keys = {0:keys1, 1:keys2}
num_shards = 2
for v, k in keys.items():
for key in k:
self.assertEqual(lounge_hash(key) % num_shards, int(v))
self.assertEqual(resp.body["total_rows"], 4)
self.assertEqual(resp.body["offset"], 0)
self.assertEqual(len(resp.body["rows"]), 4)
rows = [x["key"] for x in resp.body["rows"]]
rows.sort()
self.assertEqual(rows, ["a","b","c","y"])
def test_01_dhcp(self):
(resp, data) = self.client.view(self.obj, 0)
self.assertEqual(resp.status, 200)
data = cjson.decode(data)
# pprint.pprint(data)
# EDIT
with open('xivojson/dhcp.json') as f:
content = cjson.decode(f.read())
# print content
(resp, data) = self.client.edit(self.obj, content)
self.assertEqual(resp.status, 200)
def sjson_parser(source, logger=None):
"""
SJSON parser based on cjson module. Reads data line by line in
streaming json format.
"""
obj = None
for line in source:
if not obj:
obj = cjson.decode(line + "]}")
elif line.startswith("]"):
break
else:
o = cjson.decode(line[1:])
yield o
if lat>24.52 and lat<49.38 and lon<-66.95 and lon>-124.77:
return 1
elif lat>54.66 and lat<71.83 and ((lon<-130 and lon>-180) or (lon>173 and lon<180)):
return 1
else:
return 0
#for line in open(infile,'r'):
# line1=cjson.decode(line)
# #if 'entertain'in line1['tag'] or 'entertainment' in line1['tag']:
# lat_u=line1['user_lat']
# lon_u=line1['user_lng']
# lat_c=line1['list_creator_lat']
# lon_c=line1['list_creator_lng']
# if in_box_us(lat_u,lon_u)==1 or in_box_us(lat_c,lon_c)==1:
# outfile1.write(line)
for line in open(infile,'r'):
line1=cjson.decode(line)
# if 'tech' in line1['tag'] or 'techy' in line1['tag'] or 'technology' in line1['tag']:
#if 'entertain' in line1['tag'] or 'entertainment' in line1['tag'] or 'entertaining' in line1['tag'] or 'entertainer' in line1['tag']
if 'nutrition' in line1['tag']:
lat_u=line1['user_lat']
lon_u=line1['user_lng']
lat_c=line1['list_creator_lat']
lon_c=line1['list_creator_lng']
if in_box_us(lat_u,lon_u)==1 or in_box_us(lat_c,lon_c)==1:
outfile1.write(line)
def unpack(raw):
# return decode(decompress(raw))
return decode(raw)
import cjson
infile1 = '../backbone/lc/gpd_hou'
infile2 = '../backbone/graph/gpd_hou_cost'
outfile = open('./hou', 'w')
nm = open(infile1, 'r')
lc = open(infile2, 'r')
nm = cjson.decode(nm.readline())
lc = cjson.decode(lc.readline())
for key, value in lc.iteritems():
if key in nm.keys():
if nm[key][0] != value[0]:
print >> outfile, key, '-', value[0], '-', nm[key][0]
else:
print >> outfile, '---', key, '-', value
def readUsers():
f = open("users.passwd")
users = f.read()
f.close()
users = cjson.decode(users)
return users
#remove tag that are not in the tag_user_dict
import sys
import cjson
argv = sys.argv
#inputfilename unique_tag outputfilename
infile1 = open(argv[1], 'r')
infile2 = open(argv[2], 'r')
tag_f = cjson.decode(infile2.readline())
tag_f = tag_f.keys()
outfile = open(argv[3], 'w')
for line in infile1:
line = line.split('\t')[1]
line = cjson.decode(line)
dictt = {}
for key, value in line[1].iteritems():
if key in tag_f and value > 1:
dictt[key] = value
outfile.write(cjson.encode([line[0], dictt]) + '\n')
if __name__ == "__main__":
try:
filename = '../../centrality/lc/rulelist_tfidf1-hou'#sys.argv[1]
rules_file=open(filename,'r')
tagfreqdict=open('../lc/tag_freq_dict_hou','r')
root = 'ROOT' #sys.argv[2]
except IndexError:
sys.stderr.write('no input and/or root node specified\n')
sys.stderr.write('usage: python edmonds.py <file> <root>\n')
sys.exit(1)
G=construct_directed_graph_from_rules(rules_file,tagfreqdict)
h = edmonds(root,G)
outfile=open('test','w')
rootdict={}
for s in h:
for t in h[s]:
rootdict[t]=s
print>>outfile, "%s-%s" % (s,t)
infile1=open('../../centrality/lc/gpd_hou','r')
rootdict1=cjson.decode(infile1.readline())
for key,value in rootdict1.iteritems():
if rootdict[key]!=value[0]:
print key,value, rootdict[key]
# cjson: 6.57
# json: 11.86
# simplejson: 14.98
# cPickle: 30.98
# +- 0.5 seconds
try:
import ujson
_json_decode = ujson.decode
_json_encode = ujson.encode
except ImportError:
try:
import cjson
# You can find the patch for cjson here: http://vazor.com/media/python-cjson-1.0.5.diff
# An unpatched version (1.0.5 is the latest as of writing)
# won't decode that correctly and thus trigger an AssertionError here:
assert '/' == cjson.decode('"\/"')
_json_decode = cjson.decode
_json_encode = cjson.encode
except (AssertionError, ImportError):
try:
# But - json ist slower? We will overwrite that later by simplejson. ;-)
import json
assert hasattr(json, "loads") and hasattr(json, "dumps")
_json_decode = json.loads
_json_encode = json.dumps
has_python_json = True
except (AssertionError, ImportError):
has_python_json = False
try:
import simplejson
def _get_dict(self):
return decode(self._get_json_string())
#http://nominatim.openstreetmap.org/reverse?format=xml&lat=52.5487429714954&lon=-1.81602098644987&zoom=18&addressdetails=1
#import requests
#r=requests.post(std)
#for line in r.iter_lines():
# line=cjson.decode(line)
# print line
# print line.keys()
# print line['address']['county']
infile = '/spare/wei/folk/listings_us'#list_creator_user_location_nonsingular_100'
outfile='/spare/wei/folk/list_creator_user_addr_us'
web='http://nominatim.openstreetmap.org/reverse?format=json'
web='http://open.mapquestapi.com/nominatim/v1/reverse.php?format=json'
extra='&zoom=%2018&addressdetails=1'
outfile=open(outfile,'w')
for line in open(infile,'r'):
line=cjson.decode(line)
#print line['tag']
if 'tech' in line['tag'] or 'technology' in line['tag']:
# print line['tag']
lat_1=line['list_creator_lat']
lon_1=line['list_creator_lng']
lat_2=line['user_lat']
lon_2=line['user_lng']
creator_lat='&lat='+str(lat_1)
creator_lon='&lon='+str(lon_1)
user_lat='&lat='+str(lat_2)
user_lon='&lon='+str(lon_2)
try:
creator_url=web+creator_lat+creator_lon#+extra
# print creator_url
creator_info = urllib2.urlopen(creator_url)
def retrieve_graph_from_dbpedia(term):
assert ONLINE_ENABLED
logger.info('online access - DBpedia: {term}'.format(term=unicode(term)))
term_utf = term.encode('utf-8')
term_url = quote_plus(term_utf, safe=str("/:#,()'"))
#print '---'
#print 'term_url', term_url
sparql = SPARQLWrapper("http://dbpedia.org/sparql")
#query = """
# SELECT ?p ?o
# WHERE {{ <{term_url}> ?p ?o }}
#""".format(term_url=term_url)
query = """
SELECT ?p ?o
WHERE {{
<{term_url}> ?p ?o
FILTER( STRSTARTS(STR(?p), "{foaf}")
|| STRSTARTS(STR(?p), "{rdf}")
|| STRSTARTS(STR(?p), "{rdfs}")
|| STRSTARTS(STR(?p), "{dcterms}")
|| STRSTARTS(STR(?p), "{ontology}"))
FILTER (isURI(?o) || langMatches(lang(?o), "EN"))
}}
""".format(term_url=term_url,
foaf=unicode(FOAF),
rdf=unicode(RDF),
rdfs=unicode(RDFS),
dcterms=unicode(DCTERMS),
ontology=unicode(ONTOLOGY))
sparql.setQuery(query.encode('utf-8'))
sparql.setReturnFormat(JSON)
try:
results = sparql.query()
# workaround for "Invalid \escape" error which can be raised by
# convert()
body = results.response.read()
results = cjson.decode(body)
except HTTPError as exc:
# can occur if DBpedia is under maintenance (quite often)
logger.error('Getting graph for {term} failed; {message}; {excType}'
.format(term=term, message=exc.message, excType=unicode(type(exc))))
return None
# create graph and bind relevant namespaces
graph = Graph()
for prefix, namespace in NAMESPACES_DICT.items():
graph.bind(prefix, namespace)
LITERAL_MAX_LENGTH = 600
for result in results["results"]["bindings"]:
try:
p = URIRef(result['p']['value'])
# filter wikiPageRevisionID, wikiPageExternalLike etc.
if p.startswith(ONTOLOGY['wiki']):
continue
if result['o']['type'] == 'uri':
o = URIRef(result['o']['value'])
else:
o = Literal(result['o']['value'])
# if object is too long (e.g. abstract, ignore it)
if len(o) > LITERAL_MAX_LENGTH:
continue
graph.add((term, p, o))
#print type(p), p
#print type(o), o
#print '*'
except KeyError:
continue
# check if the graph is not empty
if not graph:
logger.warning('Retrieved empty graph for ' + unicode(term))
return graph
#get tag_freq_dict for training data from user_tag_dict
import sys
import cjson
infilename = str(sys.argv[1])
outfilename = str(sys.argv[2])
#unique=str(sys.argv[3])
#uniquetag=open(unique,'w')
outfile = open(outfilename, 'w')
infile = open(infilename, 'r')
print infilename, outfilename
#unique_tag={}
tag_freq_dict = {}
for line in infile:
# print line
#line = line.split('\t')
tagdict = cjson.decode(line)[1]
for key, value in tagdict.iteritems():
tag_freq_dict[key] = tag_freq_dict.get(key, 0) + 1
#if len(tagdict[1])<5 or tagdict[-1]<9:
# continue
#else:
#unique_tag[tagdict[0]]=tagdict[-1]
outfile.write(cjson.encode(tag_freq_dict) + '\n')
#uniquetag.write(cjson.encode(unique_tag)+'\n')
def main(self):
while not self.finished():
if self.dataReady("inbox"):
channel = self.recv("inbox")
sleeper.sleep(
1) # Temporary delay to ensure not hammering /programmes
# Setup in case of URL errors later
data = None
# Define URLs for getting schedule data and DVB bridge information
# By BBC covention, schedule info runs to 5am the next day
if datetime.utcnow().hour < 5:
scheduleurl = "http://www.bbc.co.uk" + self.channels[
channel][1] + "/" + strftime(
"%Y/%m/%d", gmtime(time() - 86400)) + ".json"
else:
scheduleurl = "http://www.bbc.co.uk" + self.channels[
channel][1] + "/" + strftime("%Y/%m/%d", gmtime(
time())) + ".json"
#syncschedurl = "http://beta.kamaelia.org:8082/dvb-bridge?command=channel&args=" + urllib.quote(self.channels[channel][0])
#synctimeurl = "http://beta.kamaelia.org:8082/dvb-bridge?command=time"
syncschedurl = "http://10.92.164.147:8082/dvb-bridge?command=channel&args=" + urllib.quote(
self.channels[channel][0])
synctimeurl = "http://10.92.164.147:8082/dvb-bridge?command=time"
# Grab SyncTV time data to work out the offset between local (NTP) and BBC time (roughly)
self.send([synctimeurl], "dataout")
while not self.dataReady("datain"):
self.pause()
yield 1
recvdata = self.recv("datain")
if recvdata[0] == "OK":
content = recvdata[1]
else:
content = None
# Work out time difference between local time and BBC time
if content != None:
try:
decodedcontent = cjson.decode(content)
if decodedcontent[0] == "OK":
difference = time() - decodedcontent[2]['time']
except cjson.DecodeError, e:
print "cjson.DecodeError:", e.message
if 'difference' in locals():
# Grab actual programme start time from DVB bridge channel page
self.send([syncschedurl], "dataout")
while not self.dataReady("datain"):
self.pause()
yield 1
recvdata = self.recv("datain")
if recvdata[0] == "OK":
content = recvdata[1]
else:
content = None
if content != None:
try:
decodedcontent = cjson.decode(content)
if decodedcontent[0] == "OK":
proginfo = decodedcontent[2]['info']
except cjson.DecodeError, e:
print "cjson.DecodeError:", e.message
# Grab BBC schedule data for given channel
self.send([scheduleurl], "dataout")
while not self.dataReady("datain"):
self.pause()
yield 1
recvdata = self.recv("datain")
if recvdata[0] == "OK":
content = recvdata[1]
else:
content = None
# Read and decode schedule
if content != None:
try:
decodedcontent = cjson.decode(content)
except cjson.DecodeError, e:
print "cjson.DecodeError:", e.message
if 'proginfo' in locals():
showdate = proginfo['NOW']['startdate']
showtime = proginfo['NOW']['starttime']
actualstart = proginfo['changed']
showdatetime = datetime.strptime(
str(showdate[0]) + "-" + str(showdate[1]) + "-" +
str(showdate[2]) + " " + str(showtime[0]) + ":" +
str(showtime[1]) + ":" + str(showtime[2]),
"%Y-%m-%d %H:%M:%S")
# SyncTV (DVB Bridge) produced data - let's trust that
if 'decodedcontent' in locals():
for programme in decodedcontent['schedule']['day'][
'broadcasts']:
starttime = parse(programme['start'])
gmt = pytz.timezone("GMT")
starttime = starttime.astimezone(gmt)
starttime = starttime.replace(tzinfo=None)
# Attempt to identify which DVB bridge programme corresponds to the /programmes schedule to get PID
if showdatetime == starttime or (
showdatetime + timedelta(minutes=1)
== starttime and string.lower(
proginfo['NOW']['name'])
== string.lower(
programme['programme']
['display_titles']['title'])
) or (showdatetime - timedelta(minutes=1)
== starttime
and string.lower(proginfo['NOW']['name'])
== string.lower(
programme['programme']
['display_titles']['title'])):
duration = (
proginfo['NOW']['duration'][0] * 60 *
60
) + (proginfo['NOW']['duration'][1] *
60) + proginfo['NOW']['duration'][2]
progdate = parse(programme['start'])
tz = progdate.tzinfo
utcoffset = datetime.strptime(
str(tz.utcoffset(progdate)),
"%H:%M:%S")
utcoffset = utcoffset.hour * 60 * 60
# Something's not right with the code below #TODO #FIXME
timestamp = sleeper.mktime(
showdatetime.timetuple()) + utcoffset
if 'difference' in locals():
offset = (timestamp -
actualstart) - difference
else:
offset = timestamp - actualstart
pid = programme['programme']['pid']
title = programme['programme'][
'display_titles']['title']
# Fix for unicode errors caused by some /programmes titles
if (not isinstance(title, str)) and (
not isinstance(title, unicode)):
title = str(title)
print[
pid, title, offset, duration,
str(showdatetime) + " GMT", utcoffset
]
data = [
pid, title, offset, duration,
timestamp, utcoffset
]
else:
# Couldn't use the DVB Bridge, so work out what's on NOW here
utcdatetime = datetime.now()
# Analyse schedule
if 'decodedcontent' in locals():
for programme in decodedcontent['schedule']['day'][
'broadcasts']:
starttime = parse(programme['start'])
starttime = starttime.replace(tzinfo=None)
endtime = parse(programme['end'])
endtime = endtime.replace(tzinfo=None)
if (utcdatetime >= starttime) & (utcdatetime <
endtime):
pid = programme['programme']['pid']
title = programme['programme'][
'display_titles']['title']
# Fix for unicode errors caused by some /programmes titles
if (not isinstance(title, str)) and (
not isinstance(title, unicode)):
title = str(title)
# Has to assume no offset between scheduled and actual programme start time as it knows no better because of the lack of DVB bridge
progdate = parse(programme['start'])
tz = progdate.tzinfo
utcoffset = datetime.strptime(
str(tz.utcoffset(progdate)),
"%H:%M:%S")
utcoffset = utcoffset.hour * 60 * 60
timestamp = sleeper.mktime(
progdate.timetuple()) - utcoffset
print[
pid, title, 0, programme['duration'],
programme['start'], utcoffset
]
data = [
pid, title, 0, programme['duration'],
timestamp, utcoffset
]
def map_hashtag_to_locFreq(self, key, line):
if False: yield
listt = cjson.decode(line)
for [uid, freq] in listt[1].iteritems():
self.hashtagdict[uid][listt[0]] = freq
import find_mk_params, sys, os, re, cjson
mkout_dir = find_mk_params.run_name + '/mktest_out/'
gm = cjson.decode(open(find_mk_params.run_name + '/genemaps.json').read())
sn = cjson.decode(open(find_mk_params.run_name + '/species_names.json').read())
geneFamilies = gm['geneFamilies']
geneToSpecies = gm['geneToSpecies']
outf = open(find_mk_params.run_name + '/alpha_values.txt', 'w')
outf.write("K12Gene\tGene\tAlpha\tDn\tDs\tPn\tPs\n")
for gf in geneFamilies:
gf.sort()
outfname = mkout_dir + str(repr(gf).__hash__()) + '.txt'
try:
outfd = open(outfname)
mktest_results = outfd.read()
except Exception as e:
sys.stderr.write("Couldn't read output for %s (%s)\n" % (outfname, e))
continue
fixedAS = re.findall('#Fixed\s+(\d+)\s+(\d+)', mktest_results)
polyAS = re.findall('#Poly\s+(\d+)\s+(\d+)', mktest_results)
if len(fixedAS) != 1:
sys.stderr.write("File %s has %i #Fixed lines\n" %
(outfname, len(fixedAS)))
continue
if len(polyAS) != 1:
sys.stderr.write("File %s has %i #Poly lines\n" %
(outfname, len(polyAS)))
continue
Dn, Ds = fixedAS[0]
Pn, Ps = polyAS[0]
Dn, Ds, Pn, Ps = map(int, (Dn, Ds, Pn, Ps))
for key, value in dictionary.iteritems():
if isinstance(value, dict):
outfile.write('%s%s\n' % (ident, key))
print_dict(value, outfile, ident + ' ')
else:
outfile.write(ident + '%s = %s\n' % (key, value))
#G=nx.DiGraph()
#G.add_node('ROOT')
#args rootdict unitags gpd folk removelist
infile5 = sys.argv[5]
infile5 = open(infile5, 'r')
removelist = cjson.decode(infile5.readline())
taglist = []
infile1 = sys.argv[2] #'/spare/wei/local/uni_tag_ch3'
#infile1='./link-dict_lt10'
infile1 = open(infile1, 'r')
taglist = cjson.decode(infile1.readline())
taglist = taglist.keys()
#infile='/spare/wei/root_dict_en_0.1_l1-3'
infile = sys.argv[1] #'/spare/wei/local/root_dict_ch3-log'
#infile='/spare/wei/root_dict_en_log_0.1_v2'
#infile='root_dict_lt10_schz_0.6'
infile = open(infile, 'r')
graph_parent_dict = {}
graph_parent_dict_s = {}
try:
homedir = os.path.expanduser("~")
file = open(homedir + "/twitter-login.conf", 'r')
save = True
except IOError, e:
print(
"Failed to load config file - not saving oauth keys: "
+ str(e))
if save:
raw_config = file.read()
file.close()
# Read config and add new values
config = cjson.decode(raw_config)
config['key'] = access_token['oauth_token']
config['secret'] = access_token['oauth_token_secret']
raw_config = cjson.encode(config)
# Write out the new config file
try:
file = open(homedir + "/twitter-login.conf", 'w')
file.write(raw_config)
file.close()
except IOError, e:
print("Failed to save oauth keys: " + str(e))
self.keypair = [
import cjson
from collections import defaultdict
from operator import itemgetter
gpdp = '../backbone1/gpd_%s'
bb = defaultdict(dict)
bbb = defaultdict(dict)
ll = [
'atlanta', 'new_york', 'la', 'seatle', 'houston', 'dallas', 'indiana',
'miami', 'sf', 'chicago'
]
out1 = open('cnts', 'w')
out2 = open('cnts1', 'w')
for key in ll:
gpd = gpdp % key
inf = open(gpd, 'r')
gpddict = cjson.decode(inf.readline())
for key, value in gpddict.iteritems():
#bb[key][value]=bb[key].get(value,0)+1
bb[key][value[0]] = bb[key].get(value[0], 0) + 1
bbb[key][value[0]] = bbb[key].get(value[0], 0) + value[1]
bb1 = defaultdict(list)
cnt = 0
for key, value in bb.iteritems():
xxx = sorted(value.items(), key=itemgetter(1), reverse=1)
prb = sorted(bbb[key].items(), key=itemgetter(1), reverse=1)
# print key,xxx
print >> out1, key, xxx, prb
if len(xxx) >= 2 and xxx[0][1] == xxx[1][1] and xxx[0][1] >= 2:
#print>>out2,key,xxx,prb
eqlist = []
for item in xxx:
def load(self):
data = self.file.read()
return json.decode(data)
def decode(self, response_object):
#return self._decode_dates(json.load(response_object))
return self._decode_dates(
cjson.decode(unicode(response_object.read(),
'utf-8'))) #@UndefinedVariable
# {
# "connected":"69",
# "when":["Morning","Noon"],
# "match":"one"
# }
# endmsg
# end
# parameters are separated by comas. First one
# is connected value to trigger, other ones are
# one or more periods where state must become "pushed"
import Crossfire
import string
from CFTimeOfDay import TimeOfDay
import cjson
event = Crossfire.WhatIsEvent()
parameters = cjson.decode(event.Message)
alreadymatched = (event.Value != 0)
connected = int(parameters["connected"])
inverse = "inverse" in parameters and parameters["inverse"] == True
match = False
if not "match" in parameters:
Crossfire.Log(
Crossfire.LogError,
"Script push_period.py didn't get a 'match' parameter. Only got %s" %
parameters)
elif parameters["match"].lower() == "one":
match = TimeOfDay().matchAny(parameters["when"]) != inverse
elif parameters["match"].lower() == "all":
match = TimeOfDay().matchAll(parameters["when"]) != inverse
else:
Crossfire.Log(
############################## Load genemaps.json
import itertools
import cjson
gm=cjson.decode(open('genemaps.json').read())
geneFamilies=gm['geneFamilies']
geneToSpecies=gm['geneToSpecies']
geneToOrthologs=gm['geneToOrthologs']
############################## Upload genemaps.json to sqlite
import sqlite3
conn=sqlite3.connect('example.db')
c=conn.cursor()
def entryFromGene(g):
species = geneToSpecies[g]
orthlgs = ' '.join(geneToOrthologs[g])
ontl = None
return (g, species, orthlgs, ontl)
c.executemany('INSERT INTO Genes VALUES (?,?,?,?)', itertools.imap(entryFromGene,geneToSpecies.iterkeys()))
conn.commit()
############################## Add nucleotide_seq_fasta and uniprot_xml TEXT columns
import sqlite3
conn=sqlite3.connect('example.db')
c=conn.cursor()
c.execute('ALTER TABLE Genes ADD COLUMN nucleotide_seq_fasta TEXT')
c.execute('ALTER TABLE Genes ADD COLUMN uniprot_xml TEXT')
conn.commit()
############################## Add fasta sequences
import itertools, cjson, sqlite3
gs=cjson.decode(open('gene_sequences.json').read())
def deserialize(msg):
return cjson.decode(msg)
def genotype_str(genotype):
return fold(operator.add, [allele * count for allele, count in genotype])
if __name__ == '__main__':
ploidy = 2 # assume ploidy 2 for all individuals and all positions
potential_alleles = ['A', 'T', 'G', 'C']
# genotypes are expressed as sets of allele frequencies
genotypes = list_genotypes_to_count_genotypes(
list(multiset.multichoose(ploidy, potential_alleles)))
for line in sys.stdin:
position = cjson.decode(line)
#print position['position']
samples = position['samples']
position['coverage'] = sum([
len(sample['alleles'])
for samplename, sample in samples.iteritems()
])
#potential_alleles = ['A','T','G','C']
potential_alleles = set()
for samplename, sample in samples.items():
# only process snps and reference alleles
alleles = [
allele for allele in sample['alleles']
if allele['type'] in ['reference', 'snp']
0,
'num':
250,
'noIL':
1,
'restype':
'company',
'sortas':
'MarketCap',
'q':
'[(exchange == "TSE") & (market_cap >= 1000000000) & (dividend_yield >= 3) & (dividend_recent_quarter > 0) & (last_price > 0)]'
}
response = requests.get(url, params=payload)
# Parse response using cjson
json_response = cjson.decode(response.text)
pdb.set_trace()
# Create list of stocks - [cid, symbol, name]
symbols = []
for company in json_response['searchresults']:
# Dynamically load named values into a dictionary
values = {}
for column in company['columns']:
values[column['field']] = column['value']
# Cast yield, dividend and price
dividend_yield = float(values['DividendYield']) / 100
price = float(values['QuoteLast'])
dividend = float(values['DividendRecentQuarter'])
def doStuff(self, channel):
# Check what's on for each channel
self.send(channel, "whatson")
while not self.dataReady("whatson"):
pass
data = self.recv("whatson")
if data == None:
pid = None
else:
pid = data[0]
title = data[1]
offset = data[2]
duration = data[3]
expectedstart = data[4]
if pid != self.channels[channel]:
# Perhaps just do a duplicate scan before creating Twitter stream
if pid == None:
self.channels[channel] = None
print(channel + ": Off Air")
else:
self.channels[channel] = pid
self.send(["http://www.bbc.co.uk/programmes/" + pid + ".rdf"],
"dataout")
while not self.dataReady("datain"):
pass
recvdata = self.recv("datain")
if recvdata[0] == "OK":
programmedata = recvdata[1]
else:
# Fake programme data to prevent crash - not ideal
programmedata = '<?xml version="1.0" encoding="utf-8"?> \
<rdf:RDF xmlns:rdf = "http://www.w3.org/1999/02/22-rdf-syntax-ns#" \
xmlns:rdfs = "http://www.w3.org/2000/01/rdf-schema#" \
xmlns:owl = "http://www.w3.org/2002/07/owl#" \
xmlns:foaf = "http://xmlns.com/foaf/0.1/" \
xmlns:po = "http://purl.org/ontology/po/" \
xmlns:mo = "http://purl.org/ontology/mo/" \
xmlns:skos = "http://www.w3.org/2008/05/skos#" \
xmlns:time = "http://www.w3.org/2006/time#" \
xmlns:dc = "http://purl.org/dc/elements/1.1/" \
xmlns:dcterms = "http://purl.org/dc/terms/" \
xmlns:wgs84_pos= "http://www.w3.org/2003/01/geo/wgs84_pos#" \
xmlns:timeline = "http://purl.org/NET/c4dm/timeline.owl#" \
xmlns:event = "http://purl.org/NET/c4dm/event.owl#"> \
</rdf:RDF>'
# RDF reader needs to read from a file so write out first
# Alternative is to read from a URL, but this lacks proper proxy support
filepath = "tempRDF.txt"
file = open(filepath, 'w')
file.write(programmedata)
file.close()
g = Graph()
# This is a temporary proxy fix. A URL could be put here instead
g.parse("tempRDF.txt")
# Identify the brand and whether there are any official hashtags
twittags = list()
for bid in g.subjects(object=rdflib.URIRef(
'http://purl.org/ontology/po/Brand')):
# bid is Brand ID
bidmod = bid.replace("#programme", "")
bidmod = str(bidmod.replace("file:///programmes/", ""))
if self.officialbrandtags.has_key(bidmod):
twittags = self.officialbrandtags[bidmod]
break
# Identify the series and whether there are any official hashtags
if len(twittags) == 0:
# Identify the brand and whether there are any official hashtags
for sid in g.subjects(object=rdflib.URIRef(
'http://purl.org/ontology/po/Series')):
# sid is Series ID
sidmod = sid.replace("#programme", "")
sidmod = str(sidmod.replace("file:///programmes/", ""))
if self.officialseriestags.has_key(sidmod):
twittags = self.officialseriestags[sidmod]
break
vidmod = ""
so = g.subject_objects(predicate=rdflib.URIRef(
'http://purl.org/ontology/po/version'))
# Pick a version, any version - for this which one doesn't matter
for x in so:
# vid is version id
vid = x[1]
vidmod = vid.replace("#programme", "")
vidmod = vidmod.replace("file:///programmes/", "")
break
# Got version, now get people
self.send(
["http://www.bbc.co.uk/programmes/" + vidmod + ".rdf"],
"dataout")
while not self.dataReady("datain"):
pass
recvdata = self.recv("datain")
if recvdata[0] == "OK":
versiondata = recvdata[1]
else:
versiondata = '<?xml version="1.0" encoding="utf-8"?> \
<rdf:RDF xmlns:rdf = "http://www.w3.org/1999/02/22-rdf-syntax-ns#" \
xmlns:rdfs = "http://www.w3.org/2000/01/rdf-schema#" \
xmlns:owl = "http://www.w3.org/2002/07/owl#" \
xmlns:foaf = "http://xmlns.com/foaf/0.1/" \
xmlns:po = "http://purl.org/ontology/po/" \
xmlns:mo = "http://purl.org/ontology/mo/" \
xmlns:skos = "http://www.w3.org/2008/05/skos#" \
xmlns:time = "http://www.w3.org/2006/time#" \
xmlns:dc = "http://purl.org/dc/elements/1.1/" \
xmlns:dcterms = "http://purl.org/dc/terms/" \
xmlns:wgs84_pos= "http://www.w3.org/2003/01/geo/wgs84_pos#" \
xmlns:timeline = "http://purl.org/NET/c4dm/timeline.owl#" \
xmlns:event = "http://purl.org/NET/c4dm/event.owl#"> \
</rdf:RDF>'
filepath = "tempRDF.txt"
file = open(filepath, 'w')
file.write(versiondata)
file.close()
g = Graph()
g.parse("tempRDF.txt")
# Identify if this is a change of programme, or the first time we've checked what's on for print clarity
if self.firstrun:
print(channel + ": " + title)
else:
print(channel + ": Changed to - " + title)
# Minor alterations
title = title.replace("&", "and")
if ":" in title:
titlebits = title.split(":")
title = titlebits[0]
# Saving a copy here so apostrophes etc can be used in the Twitter people search
titlesave = title
# Remove punctuation
for item in """!"#$%()*+,-./;<=>?@[\\]?_'`{|}?""":
title = title.replace(item, "")
keywords = dict()
# Save keywords next to a descriptor of what they are
keywords[pid] = "PID"
# Add official hashtags to the list
for tag in twittags:
keywords[tag] = "Twitter"
# Duplicates will be removed later
# If the title has 'The' in it, add hashtags both with and without the 'the' to the keyword list
# This simply broadens the list of search terms
if string.find(title, "The", 0, 3) != -1:
newtitle = string.replace(re.sub("\s+", "", title), "The ",
"", 1)
keywords[channel] = "Channel"
keywords["#" +
string.lower(re.sub("\s+", "", title))] = "Title"
# Check for and remove year too - some programmes contain a year which may be undesirable from a search point of view
keywords["#" + string.replace(
string.lower(re.sub("\s+", "", title)), " " +
str(date.today().year), "", 1)] = "Title"
keywords[
'#' +
string.lower(re.sub("\s+", "", newtitle))] = "Title"
# Check for and remove year too
keywords['#' + string.replace(
string.lower(re.sub("\s+", "", newtitle)), " " +
str(date.today().year), "", 1)] = "Title"
else:
keywords[channel] = "Channel"
keywords["#" +
string.lower(re.sub("\s+", "", title))] = "Title"
keywords["#" + string.replace(
string.lower(re.sub("\s+", "", title)), " " +
str(date.today().year), "", 1)] = "Title"
allwordtitle = string.replace(title, "The ", "", 1)
allwordtitle = allwordtitle.lower()
# Remove current year from events
allwordtitle = allwordtitle.replace(
" " + str(date.today().year), "", 1)
titlewords = allwordtitle.split()
if len(titlewords) > 1:
keywords[allwordtitle] = "Title"
else:
# Trial fix for issue of one word titles producing huge amounts of data
# This occurs for keywords like 'Weather' and 'Breakfast' which aren't BBC limited terms
keywords[allwordtitle + "^" + "bbc"] = "Title"
keywords["#" + re.sub("\s+", "", allwordtitle)] = "Title"
# Where a channel uses text for a number, we also want to search using the numeric representation
numwords = dict({
"one": 1,
"two": 2,
"three": 3,
"four": 4,
"five": 5,
"six": 6,
"seven": 7
})
for word in numwords:
if word in channel.lower(
) and channel != "asiannetwork": # Bug fix! asianne2rk
numchannel = string.replace(channel.lower(), word,
str(numwords[word]))
keywords[numchannel] = "Channel"
break
if str(numwords[word]) in channel.lower():
numchannel = string.replace(channel.lower(),
str(numwords[word]), word)
keywords[numchannel] = "Channel"
break
# Load NameCache (people we've already searched for on Twitter to avoid hammering PeopleSearch)
save = False
try:
homedir = os.path.expanduser("~")
file = open(homedir + "/namecache.conf", 'r')
save = True
except IOError, e:
print(
"Failed to load name cache - will attempt to create a new file: "
+ str(e))
if save:
raw_config = file.read()
file.close()
try:
config = cjson.decode(raw_config)
except cjson.DecodeError, e:
config = dict()
else:
config = dict()
# Find people's names in retrieved RDF
s = g.subjects(
predicate=rdflib.URIRef(
'http://www.w3.org/1999/02/22-rdf-syntax-ns#type'),
object=rdflib.URIRef('http://purl.org/ontology/po/Role'))
for x in s:
rid = g.value(predicate=rdflib.URIRef(
'http://purl.org/ontology/po/role'),
object=rdflib.BNode(x))
pid = g.value(
subject=rdflib.BNode(rid),
predicate=rdflib.URIRef(
'http://purl.org/ontology/po/participant'))
firstname = str(
g.value(subject=rdflib.BNode(pid),
predicate=rdflib.URIRef(
'http://xmlns.com/foaf/0.1/givenName')))
lastname = str(
g.value(subject=rdflib.BNode(pid),
predicate=rdflib.URIRef(
'http://xmlns.com/foaf/0.1/familyName')))
if config.has_key(firstname + " " + lastname):
# Found a cached value - this person has been searched for using Twitter
if config[firstname + " " + lastname] != "":
keywords[config[firstname + " " +
lastname]] = "Twitter"
else:
# Not cached yet - new request to Twitter people search
self.send(firstname + " " + lastname, "search")
while not self.dataReady("search"):
pass
twitdata = self.recv("search")
screenname = ""
try:
for user in twitdata:
# Only use this Twitter screen name if there's a good chance they're the person we're after
if user.has_key('verified'):
if (user['verified'] == True
or user['followers_count'] > 10000
) and string.lower(
user['name']) == string.lower(
firstname + " " + lastname):
screenname = user['screen_name']
keywords[screenname] = "Twitter"
break
except AttributeError, e:
pass
config[firstname + " " + lastname] = screenname
keywords[firstname + " " + lastname] = "Participant"
def read_json_yield_uid(line):
line = cjson.decode(line)
user_id = line['user_id']
tags = line['tag']
for tag in tags:
yield user_id, tag
def print_dict(dictionary,outfile,ident = '', braces=1):
""" Recursively prints nested dictionaries."""
for key, value in dictionary.iteritems():
if isinstance(value, dict):
outfile.write( '%s%s\n' %(ident,key) )
print_dict(value, outfile, ident+' ')
#else:
# outfile.write(ident+'%s = %s\n' %(key, value))
infile='../graph/gpd_hou'#'backbone-conf-5'
#infile='../backbone1/gpd_la'
list1=[]
infile=open(infile,'r')
infile=cjson.decode(infile.readline())
print len(infile)
#for key,value in infile.iteritems():
# if key not in list1:
# list1.append(key)
# if value not in list1:
# list1.append(value)
#print len(list1)
dict1={}
for key,value in infile.iteritems():
dict1[key]=value[0]
#if 'sport news' in dict1.keys():
# print '------'
outfile='folk_hou_cost'#'folk-backbone5'
outfile=open(outfile,'w')
a=build_tree(dict1)
def jloads(json_string):
"""
Deserializes ``json_string`` (a string containing a JSON document)
to a Python object, using cjson.
"""
return cjson.decode(json_string)
def jloads(json_string):
global cjson
if cjson:
return cjson.decode(json_string)
else:
return json.loads(json_string)
import cjson
import sys
from operator import itemgetter
from collections import defaultdict
from copy import deepcopy
infile = sys.argv[1] #'/spare/wei/local/rulelist_en_ch3-log'
outfile = sys.argv[2] #'/spare/wei/local/root_dict_ch3-log'
#infile='rulelist_lt10_schz_0.6'
#outfile='root_dict_lt10_schz_0.6'
outfile = open(outfile, 'w')
root_dict = defaultdict(list)
for line in open(infile, 'r'):
line = cjson.decode(line)
#print line[0]
root_dict[line[0]].append([line[1], line[2], line[3]])
#root_dict[line[1]].append([line[0],line[2],line[3],line[2]*line[3]])
sorted_root_dict = defaultdict(list)
for key, value in root_dict.iteritems():
v = deepcopy(value)
v = sorted(v, key=itemgetter(1), reverse=1)
sorted_root_dict[key] = v
for key, value in sorted_root_dict.iteritems():
outfile.write(cjson.encode([key, value]) + '\n')