def install_packages(env, to_install=None, packages=None):
"""Install packages using the home brew package manager.
Handles upgrading brew, tapping required repositories and installing or upgrading
packages as appropriate.
`to_install` is a CloudBioLinux compatible set of top level items to add,
alternatively `packages` is a list of raw package names.
"""
config_file = get_config_file(env, "packages-homebrew.yaml")
if to_install:
(packages, _) = _yaml_to_packages(config_file.base, to_install, config_file.dist)
# if we have no packages to install, do not try to install or update brew
if len(packages) == 0:
return
system.install_homebrew(env)
brew_cmd = _brew_cmd(env)
formula_repos = ["homebrew/science", "chapmanb/cbl"]
current_taps = set([x.strip() for x in env.safe_run_output("%s tap" % brew_cmd).split()])
_safe_update(env, brew_cmd, formula_repos, current_taps)
for repo in formula_repos:
if repo not in current_taps:
env.safe_run("%s tap %s" % (brew_cmd, repo))
env.safe_run("%s tap --repair" % brew_cmd)
ipkgs = {"outdated": set([x.strip() for x in env.safe_run_output("%s outdated" % brew_cmd).split()]),
"current": _get_current_pkgs(env, brew_cmd)}
_install_brew_baseline(env, brew_cmd, ipkgs, packages)
for pkg_str in packages:
_install_pkg(env, pkg_str, brew_cmd, ipkgs)
def _setup_macosx(env):
# XXX Only framework in place; needs testing
env.logger.info("MacOSX setup")
# XXX Ensure XCode is installed and provide useful directions if not
system.install_homebrew(env)
# XXX find java correctly
env.java_home = ""
def _setup_macosx(env):
# XXX Only framework in place; needs testing
env.logger.info("MacOSX setup")
# XXX Ensure XCode is installed and provide useful directions if not
system.install_homebrew(env)
# XXX find java correctly
env.java_home = ""
def install_packages(env, to_install=None, packages=None):
"""Install packages using the home brew package manager.
Handles upgrading brew, tapping required repositories and installing or upgrading
packages as appropriate.
`to_install` is a CloudBioLinux compatible set of top level items to add,
alternatively `packages` is a list of raw package names.
"""
config_file = get_config_file(env, "packages-homebrew.yaml")
if to_install:
(packages, _) = _yaml_to_packages(config_file.base, to_install,
config_file.dist)
# if we have no packages to install, do not try to install or update brew
if len(packages) == 0:
_remove_old(env, config_file.base)
return
system.install_homebrew(env)
brew_cmd = _brew_cmd(env)
formula_repos = ["homebrew/science", "chapmanb/cbl", "homebrew/dupes"]
current_taps = set(
[x.strip() for x in env.safe_run_output("%s tap" % brew_cmd).split()])
_safe_update(env, brew_cmd, formula_repos, current_taps)
current_taps = set(
[x.strip() for x in env.safe_run_output("%s tap" % brew_cmd).split()])
for repo in formula_repos:
if repo not in current_taps:
env.safe_run("%s tap %s" % (brew_cmd, repo))
env.safe_run("%s tap --repair" % brew_cmd)
ipkgs = {
"outdated":
set([
x.strip()
for x in env.safe_run_output("%s outdated" % brew_cmd).split()
]),
"current":
_get_current_pkgs(env, brew_cmd)
}
_install_brew_baseline(env, brew_cmd, ipkgs, packages)
ipkgs = {
"outdated":
set([
x.strip()
for x in env.safe_run_output("%s outdated" % brew_cmd).split()
]),
"current":
_get_current_pkgs(env, brew_cmd)
}
for pkg_str in packages:
_install_pkg(env, pkg_str, brew_cmd, ipkgs)
for pkg_str in ["pkg-config", "openssl", "cmake", "unzip"]:
_safe_unlink_pkg(env, pkg_str, brew_cmd)
with open(config_file.base) as in_handle:
to_remove = yaml.load(in_handle).get("to_remove", [])
for pkg_str in ["curl"] + to_remove:
_safe_uninstall_pkg(env, pkg_str, brew_cmd)
def install_brew(p=None, flavor=None):
"""Top level access to homebrew/linuxbrew packages.
p is a package name to install, or all configured packages if not specified.
"""
_setup_logging(env)
_configure_fabric_environment(env, flavor, ignore_distcheck=True)
system.install_homebrew(env)
if p is not None:
brew.install_packages(env, packages=[p])
else:
pkg_install = _read_main_config()[0]
brew.install_packages(env, to_install=pkg_install)
def install_brew(p=None, version=None, flavor=None):
"""Top level access to homebrew/linuxbrew packages.
p is a package name to install, or all configured packages if not specified.
"""
_setup_logging(env)
_configure_fabric_environment(env, flavor, ignore_distcheck=True)
system.install_homebrew(env)
if p is not None:
if version:
p = "%s==%s" % (p, version)
brew.install_packages(env, packages=[p])
else:
pkg_install = _read_main_config()[0]
brew.install_packages(env, to_install=pkg_install)
