def pop(name, source, enable=-1, quiet=1, _self=cmd):
'''
DESCRIPTION
"pop" provides a mechanism of iterating through an atom selection
atom by atom, where each atom is sequentially assigned to the
named selection.
USAGE
pop name, source
EXAMPLE
select src, name ca
python
while cmd.pop("tmp","src"):
cmd.zoom("tmp",2, animate=1)
for a in range(30):
cmd.refresh()
time.sleep(0.05)
python end
PYMOL API
cmd.deselect()
'''
r = DEFAULT_ERROR
try:
_self.lock(_self)
r = _cmd.pop(_self._COb,str(name),str(source),int(quiet))
if is_ok(r):
enable = int(enable)
if enable>0:
r = _cmd.onoff(_self._COb,str(name),1,0);
elif enable == 0:
r = _cmd.onoff(_self._COb,str(name),0,0)
finally:
_self.unlock(r,_self)
if _self._raising(r,_self): raise pymol.CmdException
return r
def select(name, selection="", enable=-1, quiet=1, merge=0, state=0, domain='',_self=cmd):
'''
DESCRIPTION
"select" creates a named atom selection from a
selection-expression.
USAGE
select name, selection [, enable [, quiet [, merge [, state [, domain ]]]]]
ARGUMENTS
name = a unique name for the selection
selection = a selection-expression
NOTES
If a selection-expression with explicit surrounding parethenses is
provided as the first argument, then the default selection name
is used as the name argument.
EXAMPLES
select chA, chain A
select ( resn his )
select near142, resi 142 around 5
PYMOL API
cmd.select(string name, string selection)
SEE ALSO
delete
'''
r = DEFAULT_ERROR
try:
_self.lock(_self)
if selection=="":
selection = name
if _cmd.get(_self._COb,"auto_number_selections")!=0.0:
sel_cnt = _cmd.get(_self._COb,"sel_counter") + 1.0
_cmd.legacy_set(_self._COb,"sel_counter","%1.0f" % sel_cnt)
name = "sel%02.0f" % sel_cnt
else:
name = "sele"
if name == None:
sel_cnt = _cmd.get(_self._COb,"sel_counter") + 1.0
_cmd.legacy_set(_self._COb,"sel_counter","%1.0f" % sel_cnt)
name = "sel%02.0f" % sel_cnt
# preprocess selection (note: inside TRY)
selection = selector.process(selection)
merge = int(merge)
if merge==1:
selection = "("+selection+") or ?"+name # merge if exists
elif merge==2:
selection = "("+selection+") or ??"+name # merge if exists and active
#
r = _cmd.select(_self._COb,str(name),str(selection),int(quiet),int(state)-1,str(domain))
enable = int(enable)
if is_ok(r) and enable>0:
_cmd.onoff(_self._COb,str(name),1,0);
elif enable == 0:
_cmd.onoff(_self._COb,str(name),0,0)
finally:
_self.unlock(r,_self)
if _self._raising(r,_self): raise pymol.CmdException
return r