def test_subseq_counts_1(self):
"""test subseq_counts() with length 1"""
counts = st.subseq_counts(["ACCGTATA", "CACAT"], 1)
self.assertEquals(5, counts['A'])
self.assertEquals(4, counts['C'])
self.assertEquals(1, counts['G'])
self.assertEquals(3, counts['T'])
def test_subseq_counts_1(self):
"""test subseq_counts() with length 1"""
counts = st.subseq_counts(["ACCGTATA", "CACAT"], 1)
self.assertEquals(5, counts['A'])
self.assertEquals(4, counts['C'])
self.assertEquals(1, counts['G'])
self.assertEquals(3, counts['T'])
def test_subseq_counts_2(self):
"""test subseq_counts() with length 2"""
counts = st.subseq_counts(["ACCGTATA", "CACAT"], 2)
self.assertEquals(2, counts['AC'])
self.assertEquals(1, counts['CC'])
self.assertEquals(1, counts['CG'])
self.assertEquals(1, counts['GT'])
self.assertEquals(2, counts['TA'])
self.assertEquals(2, counts['AT'])
self.assertEquals(2, counts['CA'])
def test_subseq_counts_2(self):
"""test subseq_counts() with length 2"""
counts = st.subseq_counts(["ACCGTATA", "CACAT"], 2)
self.assertEquals(2, counts['AC'])
self.assertEquals(1, counts['CC'])
self.assertEquals(1, counts['CG'])
self.assertEquals(1, counts['GT'])
self.assertEquals(2, counts['TA'])
self.assertEquals(2, counts['AT'])
self.assertEquals(2, counts['CA'])