def citation(*infos):
print(make_header("This framework", ""))
print("[Paper in preparation]\n")
for kind, modules in get_modules(*infos).items():
for module in modules:
print(make_header(kind, module))
print(get_citation_info(module, kind))
def prettyprint_citation(blocks_text):
txt = ""
for block, text in blocks_text.items():
if not txt.endswith("\n\n"):
txt += "\n\n"
txt += make_header(*block.split(":")) + "\n" + text
return txt.lstrip().rstrip() + "\n"
def install(*infos, **kwargs):
if not log.root.handlers:
logger_setup()
path = kwargs.get("path", ".")
if not path:
# See if we can get one (and only one) from infos
paths = set(
[p for p in [info.get(_path_install) for info in infos] if p])
if len(paths) == 1:
path = paths[0]
else:
print("logging?")
log.error(
"No 'path' argument given and could not extract one (and only one) "
"from the infos.")
raise HandledException
abspath = os.path.abspath(path)
log.info("Installing modules at '%s'\n", abspath)
kwargs_install = {
"force": kwargs.get("force", False),
"no_progress_bars": kwargs.get("no_progress_bars")
}
for what in (_code, _data):
kwargs_install[what] = kwargs.get(what, True)
spath = os.path.join(abspath, what)
if kwargs_install[what] and not os.path.exists(spath):
try:
os.makedirs(spath)
except OSError:
log.error(
"Could not create the desired installation folder '%s'",
spath)
raise HandledException
failed_modules = []
for kind, modules in get_modules(*infos).items():
for module in modules:
print(make_header(kind, module))
module_folder = get_folder(module, kind, sep=".", absolute=False)
try:
imported_module = import_module(module_folder,
package=_package)
except ImportError:
if kind == _likelihood:
info = (next(info for info in infos if module in info.get(
_likelihood, {}))[_likelihood][module]) or {}
if isinstance(info, string_types) or _external in info:
log.warning(
"Module '%s' is a custom likelihood. "
"Nothing to do.\n", module)
flag = False
else:
log.error("Module '%s' not recognized.\n" % module)
failed_modules += ["%s:%s" % (kind, module)]
continue
is_installed = getattr(imported_module, "is_installed", None)
if is_installed is None:
log.info("Built-in module: nothing to do.\n")
continue
if is_installed(path=abspath, **kwargs_install):
log.info("External module already installed.\n")
if kwargs_install["force"]:
log.info("Forcing re-installation, as requested.")
else:
log.info("Doing nothing.\n")
continue
try:
success = imported_module.install(path=abspath,
**kwargs_install)
except:
traceback.print_exception(*sys.exc_info(), file=sys.stdout)
log.error(
"An unknown error occurred. Delete the modules folder and try "
"again. Notify the developers if this error persists.")
success = False
if success:
log.info("Successfully installed!\n")
else:
log.error(
"Installation failed! Look at the error messages above. "
"Solve them and try again, or, if you are unable to solve, "
"install this module manually.")
failed_modules += ["%s:%s" % (kind, module)]
continue
# test installation
if not is_installed(path=abspath, **kwargs_install):
log.error(
"Installation apparently worked, "
"but the subsequent installation test failed! "
"Look at the error messages above. "
"Solve them and try again, or, if you are unable to solve, "
"install this module manually.")
failed_modules += ["%s:%s" % (kind, module)]
if failed_modules:
bullet = "\n - "
log.error(
"The installation (or installation test) of some module(s) has failed: "
"%s\nCheck output of the installer of each module above "
"for precise error info.\n", bullet + bullet.join(failed_modules))
raise HandledException
def install(*infos, **kwargs):
path = kwargs.get("path", ".")
abspath = os.path.abspath(path)
kwargs_install = {
"force": kwargs.get("force", False),
"no_progress_bars": kwargs.get("no_progress_bars")
}
for what in (_code, _data):
kwargs_install[what] = kwargs.get(what, True)
spath = os.path.join(abspath, what)
if kwargs_install[what] and not os.path.exists(spath):
try:
os.makedirs(spath)
except OSError:
log.error(
"Could not create the desired installation folder '%s'",
spath)
raise HandledException
failed_modules = []
for kind, modules in get_modules(*infos).items():
for module in modules:
print(make_header(kind, module))
module_folder = get_folder(module, kind, sep=".", absolute=False)
try:
imported_module = import_module(module_folder, package=package)
except ImportError:
if kind == _likelihood:
log.warn(
"Module '%s' not recognised. Assuming it's a custom "
"likelihood. Nothing to do.\n", module)
else:
log.error("Module '%s' not recognised.\n" % module)
failed_modules += ["%s:%s" % (kind, module)]
continue
is_installed = getattr(imported_module, "is_installed", None)
if is_installed is None:
log.info("Built-in module: nothing to do.\n")
continue
if is_installed(path=abspath, **kwargs_install):
log.info("External module already installed.\n")
if kwargs_install["force"]:
log.info("Forcing re-installation, as requested.")
else:
log.info("Doing nothing.\n")
continue
try:
success = imported_module.install(path=abspath,
**kwargs_install)
except:
traceback.print_exception(*sys.exc_info(), file=sys.stdout)
log.error(
"An unknown error occurred. Delete the modules folder and try "
"again. Notify the developers if this error persists.")
success = False
if success:
log.info("Successfully installed!\n")
else:
log.error(
"Installation failed! Look at the error messages above. "
"Solve them and try again, or, if you are unable to solve, "
"install this module manually.")
failed_modules += ["%s:%s" % (kind, module)]
continue
# test installation
if not is_installed(path=abspath, **kwargs_install):
log.error(
"Installation apparently worked, "
"but the subsequent installation test failed! "
"Look at the error messages above. "
"Solve them and try again, or, if you are unable to solve, "
"install this module manually.")
failed_modules += ["%s:%s" % (kind, module)]
if failed_modules:
log.error(
"The instalation (or installation test) of some module(s) has failed: "
"%r. Check output above.\n", failed_modules)
raise HandledException