def test_assess(self, model, solver):
with model:
assert assess(model, model.reactions.GLCpts, solver=solver) is True
pyr = model.metabolites.pyr_c
a = Metabolite('a')
b = Metabolite('b')
model.add_metabolites([a, b])
pyr_a2b = Reaction('pyr_a2b')
pyr_a2b.add_metabolites({pyr: -1, a: -1, b: 1})
model.add_reactions([pyr_a2b])
res = assess(model, pyr_a2b, 0.01, solver=solver)
expected = {
'precursors': {
a: {
'required': 0.01,
'produced': 0.0
}
},
'products': {
b: {
'required': 0.01,
'capacity': 0.0
}
}
}
assert res == expected
def test_assess(self, model, solver):
with model:
assert assess(model, model.reactions.GLCpts,
solver=solver) is True
pyr = model.metabolites.pyr_c
a = Metabolite('a')
b = Metabolite('b')
model.add_metabolites([a, b])
pyr_a2b = Reaction('pyr_a2b')
pyr_a2b.add_metabolites({pyr: -1, a: -1, b: 1})
model.add_reactions([pyr_a2b])
res = assess(model, pyr_a2b, 0.01, solver=solver)
expected = {
'precursors': {a: {'required': 0.01, 'produced': 0.0}},
'products': {b: {'required': 0.01, 'capacity': 0.0}}}
assert res == expected
def test_assess(model: Model, all_solvers: List[str]) -> None:
"""Test assess functions."""
with model:
assert assess(model, model.reactions.GLCpts, solver=all_solvers) is True
pyr = model.metabolites.pyr_c
a = Metabolite("a")
b = Metabolite("b")
model.add_metabolites([a, b])
pyr_a2b = Reaction("pyr_a2b")
pyr_a2b.add_metabolites({pyr: -1, a: -1, b: 1})
model.add_reactions([pyr_a2b])
res = assess(model, pyr_a2b, 0.01, solver=all_solvers)
expected = {
"precursors": {a: {"required": 0.01, "produced": 0.0}},
"products": {b: {"required": 0.01, "capacity": 0.0}},
}
assert res == expected