def setUp(self):
"""Setup for ScoreMatrix tests."""
self.score_matrix = ScoreMatrix('AACGU', 'ACAGU')
def fill():
pass
def traceback():
pass
self.score_matrix.fill = fill
self.score_matrix.traceback = traceback
self.empty_score_matrix = ScoreMatrix('', '')
def test_init(self):
"""Tests for ScoreMatrix __init__ function."""
#Test empty ScoreMatrix
self.empty_score_matrix = ScoreMatrix('', '')
self.assertEqual(self.empty_score_matrix.First, '')
self.assertEqual(self.empty_score_matrix.Second, '')
self.assertEqual(self.empty_score_matrix.Cols, 1)
self.assertEqual(self.empty_score_matrix.Rows, 1)
self.assertEqual(self.empty_score_matrix.GapScore, -1)
self.assertEqual(self.empty_score_matrix.GapSymbol, '-')
self.assertEqual(self.empty_score_matrix.FirstAlign, [])
self.assertEqual(self.empty_score_matrix.SecondAlign, [])
