def test_ne(self):
"""PairMatrix test for inequality should check all elements"""
p = self.ab_pairs
a = PairMatrix.empty(p)
b = PairMatrix.empty(p)
c = PairMatrix([1,2,3,4], p)
d = PairMatrix([1,2,3,4], p)
assert a != c
assert a == b
assert c == d
#Note: still compare equal if alphabets are different
x = Alphabet('xy')
x = x*x
y = PairMatrix([1,2,3,4], x)
assert y == c
#should check all elements, not just first
c = PairMatrix([1,1,1,1], p)
d = PairMatrix([1,1,1,4], p)
assert c != d
def test_ne(self):
"""PairMatrix test for inequality should check all elements"""
p = self.ab_pairs
a = PairMatrix.empty(p)
b = PairMatrix.empty(p)
c = PairMatrix([1, 2, 3, 4], p)
d = PairMatrix([1, 2, 3, 4], p)
assert a != c
assert a == b
assert c == d
#Note: still compare equal if alphabets are different
x = Alphabet('xy')
x = x * x
y = PairMatrix([1, 2, 3, 4], x)
assert y == c
#should check all elements, not just first
c = PairMatrix([1, 1, 1, 1], p)
d = PairMatrix([1, 1, 1, 4], p)
assert c != d
def test_eq(self):
"""Pairmatrix test for equality should check all elements"""
p = self.ab_pairs
a = PairMatrix.empty(p)
b = PairMatrix.empty(p)
assert a is not b
self.assertEqual(a, b)
c = PairMatrix([1,2,3,4], p)
d = PairMatrix([1,2,3,4], p)
assert c is not d
self.assertEqual(c, d)
self.assertNotEqual(a, c)
#Note: still compare equal if alphabets are different
x = Alphabet('xy')
x = x*x
y = PairMatrix([1,2,3,4], x)
self.assertEqual(y, c)
#should check all elements, not just first
c = PairMatrix([1,1,1,1], p)
d = PairMatrix([1,1,1,4], p)
assert c is not d
self.assertNotEqual(c, d)
def test_eq(self):
"""Pairmatrix test for equality should check all elements"""
p = self.ab_pairs
a = PairMatrix.empty(p)
b = PairMatrix.empty(p)
assert a is not b
self.assertEqual(a, b)
c = PairMatrix([1, 2, 3, 4], p)
d = PairMatrix([1, 2, 3, 4], p)
assert c is not d
self.assertEqual(c, d)
self.assertNotEqual(a, c)
#Note: still compare equal if alphabets are different
x = Alphabet('xy')
x = x * x
y = PairMatrix([1, 2, 3, 4], x)
self.assertEqual(y, c)
#should check all elements, not just first
c = PairMatrix([1, 1, 1, 1], p)
d = PairMatrix([1, 1, 1, 4], p)
assert c is not d
self.assertNotEqual(c, d)
def test_empty(self):
"""PairMatrix empty classmethod should produce correct class"""
p = PairMatrix.empty(self.ab_pairs)
self.assertEqual(p._data.flat, array([0,0,0,0]))
self.assertEqual(p._data, array([[0,0],[0,0]]))
self.assertEqual(p._data.shape, (2,2))
def test_empty(self):
"""PairMatrix empty classmethod should produce correct class"""
p = PairMatrix.empty(self.ab_pairs)
self.assertEqual(p._data.flat, array([0, 0, 0, 0]))
self.assertEqual(p._data, array([[0, 0], [0, 0]]))
self.assertEqual(p._data.shape, (2, 2))
