def test_recode_dense_alignment_handles_all_ids_and_defs_wo_error(self):
"""recode_dense_alignment: handles pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in alphabets.items():
try:
recode_dense_alignment(self.aln,alphabet_id=alphabet_id)
except ValueError:
raise AssertionError, "Failed on id: %s" % alphabet_id
try:
recode_dense_alignment(self.aln,alphabet_def=alphabet_def)
except ValueError:
raise AssertionError, "Failed on def: %s" % str(alphabet_def)
def test_recode_dense_alignment_handles_all_ids_and_defs_wo_error(self):
"""recode_dense_alignment: handles pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in list(alphabets.items()):
try:
recode_dense_alignment(self.aln, alphabet_id=alphabet_id)
except ValueError:
raise AssertionError("Failed on id: %s" % alphabet_id)
try:
recode_dense_alignment(self.aln, alphabet_def=alphabet_def)
except ValueError:
raise AssertionError("Failed on def: %s" % str(alphabet_def))
def test_build_alphabet_map_handles_all_ids_and_defs_wo_error(self):
"""build_alphabet_map: handles all pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in alphabets.items():
try:
build_alphabet_map(alphabet_id=alphabet_id)
except ValueError:
raise AssertionError, "Failed on id: %s" % alphabet_id
try:
build_alphabet_map(alphabet_def=alphabet_def)
except ValueError:
raise AssertionError, "Failed on def: %s" % str(alphabet_def)
def test_build_alphabet_map_handles_all_ids_and_defs_wo_error(self):
"""build_alphabet_map: handles all pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in list(alphabets.items()):
try:
build_alphabet_map(alphabet_id=alphabet_id)
except ValueError:
raise AssertionError("Failed on id: %s" % alphabet_id)
try:
build_alphabet_map(alphabet_def=alphabet_def)
except ValueError:
raise AssertionError("Failed on def: %s" % str(alphabet_def))