def __init__(self,
path=None,
bert_model='bert-base-cased',
max_length=128):
self.path = path
self.bert_model = bert_model
self.max_length = max_length
self.tokenizer = BertTokenizer.from_pretrained(self.bert_model)
self.ner_vocabulary = load_json(os.path.join(path, "ner2idx.json"))
self.rc_vocabulary = load_json(os.path.join(path, "rel2idx.json"))
self.collate_fn = collater(self.ner_vocabulary, self.rc_vocabulary)
def _load(self, path):
dataset = DataTable()
data = load_json(path)
for item in data:
ner_label = []
rc_label = []
ner_check = []
rc_check = []
text = item["text"].split(" ")
for label in item["triple_list"]:
subject_word_loc = text.index(label[0])
relation = label[1]
object_word_loc = text.index(label[2])
if subject_word_loc not in ner_check:
ner_label.append(
[subject_word_loc, subject_word_loc, "None"])
ner_check += [subject_word_loc, subject_word_loc, "None"]
if object_word_loc not in ner_check:
ner_label.append(
[object_word_loc, object_word_loc, "None"])
ner_check += [object_word_loc, object_word_loc, "None"]
rc_label.append([subject_word_loc, object_word_loc, relation])
dataset("text", text)
dataset("ner_label", ner_label)
dataset("rc_label", rc_label)
return dataset
def _load(self, path):
dataset = load_json(path)
for data in dataset:
triples = data['triples']
for triple in triples:
self.label_set.add(triple['predicate']['uri'])
return dataset
def _load(self, path):
data = load_json(path)
for item in data:
for entity_mention in item['golden-entity-mentions']:
for i in range(entity_mention['start'], entity_mention['end']):
entity_type = entity_mention['entity-type']
if i == entity_mention['start']:
self.label_set.add('B-{}'.format(entity_type))
else:
self.label_set.add('I-{}'.format(entity_type))
return data
def _load(self, path):
datas = load_json(path)
# datas = datas[0:int(len(datas)/20)]
if self.debug:
datas = datas[0:100]
dataset = DataTable()
for data in tqdm(datas):
text = data['text']
entities = data['entities']
sentences_boundaries = data['sentences_boundaries']
words_boundaries = data["words_boundaries"]
prev_length = 0
sentences = []
ners = []
for i, sentences_boundary in enumerate(sentences_boundaries):
charid2wordid = {}
sentence = []
for j, (start, end) in enumerate(words_boundaries):
if start >= sentences_boundary[
0] and end <= sentences_boundary[1]:
if start == sentences_boundary[0]:
# print("j={} prev_length={}".format(j,prev_length))
assert j == prev_length
charid2wordid = {
**charid2wordid,
**{
key: j - prev_length
for key in range(start, end + 1)
}
}
sentence.append(text[start:end])
prev_length += len(sentence)
sentences.append(sentence)
dataset("sentence", sentence)
ners_one_sentence = []
for entity in entities:
entity_boundary = entity["boundaries"]
start, end = entity_boundary
if start >= sentences_boundary[
0] and end <= sentences_boundary[1]:
index = list(
set([
charid2wordid[charid]
for charid in range(start, end)
]))
for k in index:
assert k < len(sentence)
ner = {"index": index, "type": "null"}
ners_one_sentence.append(ner)
ners.append(ners_one_sentence)
dataset("ner", ners_one_sentence)
return dataset
def _load(self, path):
data = load_json(path)
for item in data:
for event_mention in item['golden-event-mentions']:
for i in range(event_mention['trigger']['start'],
event_mention['trigger']['end']):
trigger_type = event_mention['event_type']
if i == event_mention['trigger']['start']:
self.label_set.add('B-{}'.format(trigger_type))
else:
self.label_set.add('I-{}'.format(trigger_type))
return data
def load_all(self, path):
datasets = []
for f in os.listdir(path):
if f == 'vocabulary.txt':
continue
dataset = load_json(os.path.join(path, f))
for data in dataset:
entities = data['entities']
for entity in entities:
entity
datasets.extend(dataset)
return datasets
def _load(self, path):
data = load_json(path)
for sample in data:
if len(sample["golden-event-mentions"]) > 0:
for event in sample["golden-event-mentions"]:
event_type = event["event_type"]
for argument in event["arguments"]:
role = argument["role"]
if (event_type, role) not in self.label_set:
self.label_set.add((event_type, role))
if (event_type, "trigger") not in self.label_set:
self.label_set.add((event_type, "trigger"))
return data
def _load(self, path):
dataset = load_json(path)
datable = DataTable()
for data in dataset:
token = data['token']
relation = data['relation']
subj_start = data['subj_start']
subj_end = data['subj_end']
obj_start = data['obj_start']
obj_end = data['obj_end']
self.label_set.add(relation)
datable('token', token)
datable('relation', relation)
datable('subj_start', subj_start)
datable('subj_end', subj_end)
datable('obj_start', obj_start)
datable('obj_end', obj_end)
return datable
def _load(self, path):
data = load_json(path)
for item in data:
for event_mention in item['golden-event-mentions']:
for i in range(event_mention['trigger']['start'],
event_mention['trigger']['end']):
trigger_type = event_mention['event_type']
if i == event_mention['trigger']['start']:
self.trigger_label_set.add('B-{}'.format(trigger_type))
else:
self.trigger_label_set.add('I-{}'.format(trigger_type))
"""
28 argument roles
There are 35 roles in ACE2005 dataset, but the time-related 8 roles were replaced by 'Time' as the previous work (Yang et al., 2016).
['Time-At-End','Time-Before','Time-At-Beginning','Time-Ending', 'Time-Holds', 'Time-After','Time-Starting', 'Time-Within'] --> 'Time'.
"""
for argument in event_mention['arguments']:
role = argument['role']
if role.startswith('Time'):
role = role.split('-')[0]
self.argument_label_set.add(role)
return data
def load_one(self, path):
dataset = load_json(path)
return dataset
def _load(self, path):
dataset = []
datas = load_json(path)
count = 0
for data in datas:
text = data['text']
entities = data['entities']
triples = data['triples']
sentences_boundaries = data['sentences_boundaries']
for sentences_boundary in sentences_boundaries:
entity_mentions = []
relation_mentions = []
sentence = text[sentences_boundary[0]:sentences_boundary[1]]
words = nltk.word_tokenize(sentence)
for entity in entities:
if entity['boundaries'][0] >= sentences_boundary[0] and entity['boundaries'][1] <= \
sentences_boundary[1]:
entity_mention_position = get_mention_position(
text, sentences_boundary, entity['boundaries'])
if entity_mention_position[
0] >= entity_mention_position[1]:
count += 1
continue
entity_mention = {'position': entity_mention_position}
entity_mentions.append(entity_mention)
for triple in triples:
sentence_id = triple['sentence_id']
predicate = triple['predicate']
subject = triple['subject']
object = triple['object']
if not subject['boundaries'] or not object[
'boundaries'] or sentences_boundaries[
sentence_id] != sentences_boundary:
continue
relation_type = predicate['uri']
self.label_set.add(relation_type)
subject_mention_position = get_mention_position(
text, sentences_boundary, subject['boundaries'])
object_mention_position = get_mention_position(
text, sentences_boundary, object['boundaries'])
if subject_mention_position[0] >= subject_mention_position[
1]:
count += 1
continue
if object_mention_position[0] >= object_mention_position[1]:
count += 1
continue
arguments = [
subject_mention_position, object_mention_position
]
relation_mention = {
'relation_type': relation_type,
'arguments': arguments
}
relation_mentions.append(relation_mention)
dataset.append({
'sentence': sentence,
'words': words,
'entity_mentions': entity_mentions,
'relation_mentions': relation_mentions
})
return dataset
def _load(self, path):
datas = load_json(path)
if self.debug:
datas = datas[0:100]
dataset = DataTable()
for data in tqdm(datas):
text = data['text']
sentences_boundaries = data['sentences_boundaries']
words_boundaries = data["words_boundaries"]
triples = data["triples"]
if not triples: # if there is no triples
continue
prev_length = 0
for i, sentences_boundary in enumerate(sentences_boundaries):
charid2wordid = {}
sentence = []
for j, (start, end) in enumerate(words_boundaries):
if start >= sentences_boundary[
0] and end <= sentences_boundary[1]:
if start == sentences_boundary[0]:
# print("j={} prev_length={}".format(j,prev_length))
assert j == prev_length
charid2wordid = {
**charid2wordid,
**{
key: j - prev_length
for key in range(start, end + 1)
}
}
sentence.append(text[start:end])
prev_length += len(sentence)
triples_one_sentence = []
for triple in triples:
if triple["sentence_id"] != i:
continue
if triple["subject"] is not None and triple[
"predicate"] is not None and triple[
"object"] is not None:
subject, predicate, object = triple["subject"], triple[
"predicate"], triple["object"]
if subject["boundaries"] is not None and predicate[
"boundaries"] is not None and object[
"boundaries"] is not None:
# print(triple)
keys = ["subject", "predicate", "object"]
for key in keys:
start, end = triple[key]["boundaries"]
triple[key]["boundaries"] = sorted(
list(
set([
charid2wordid[charid]
for charid in range(start, end)
])))
triples_one_sentence.append({
"subject":
triple["subject"]["boundaries"],
"predicate":
triple["predicate"]["boundaries"],
"object":
triple["object"]["boundaries"],
})
if not triples_one_sentence:
continue
dataset("sentence", sentence)
dataset("triple", triples_one_sentence)
return dataset
def load_table(path):
datable = DataTable()
datable.datas = load_json(path)
datable.headers = list(datable.datas.keys())
return datable
import cogie
from cogie.core.loss import BCEloss
from cogie.io.loader.re.nyt import NYTRELoader
from cogie.io.processor.re.nyt import NYTREProcessor
from cogie.utils import load_json
torch.cuda.set_device(4)
device = torch.device('cuda:0')
loader = NYTRELoader()
train_data, dev_data, test_data = loader.load_all(
'../../../cognlp/data/spo/nyt/data')
processor = NYTREProcessor(path='../../../cognlp/data/spo/nyt/data',
bert_model='bert-base-cased')
ner_vocabulary = load_json('../../../cognlp/data/spo/nyt/data/ner2idx.json')
rc_vocabulary = load_json('../../../cognlp/data/spo/nyt/data/rel2idx.json')
train_datable = processor.process(train_data)
train_dataset = cogie.DataTableSet(train_datable)
train_sampler = RandomSampler(train_dataset)
dev_datable = processor.process(dev_data)
dev_dataset = cogie.DataTableSet(dev_datable)
dev_sampler = RandomSampler(dev_dataset)
test_datable = processor.process(test_data)
test_dataset = cogie.DataTableSet(test_datable)
test_sampler = RandomSampler(test_dataset)
model = cogie.PFN(dropout=0.1,