Exemple #1
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 def reload_onto():
     nonlocal onto, ontol
     if ontol is None:
         if not os.path.exists(snap_filename):
             onto = Ontology("cnl/string", "Every thing is a thing.")
         else:
             onto = Ontology("cnl/file", snap_filename, stop_on_error=False)
             with e:
                 clear_output()
                 if onto.get_load_error() is not None:
                     print(str(onto.get_load_error()))
Exemple #2
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def test_load_PIZZA():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/co-ode.org/PIZZA/2007-02-12/00793.owl"
    )
Exemple #3
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def test_load_Erlangen_CRM():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/Erlangen_CRM/v5.0.1/00025.owl"
    )
Exemple #4
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def test_load_DOLCE_DOLCE_Lite():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/DOLCE/DOLCE-Lite/2008-02-08/00015.owl"
    )
Exemple #5
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def test_load_DOLCE_Plans():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/DOLCE/Plans/2008-02-08/00020.owl"
    )
Exemple #6
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def test_load_BioPAX():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/BioPAX/biopax-level2/biopax-example-ecocyc-glycolysis/v1.0/00007.owl"
    )
Exemple #7
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def test_load_DOLCE_CommonSenseMapping():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/DOLCE/CommonSenseMapping/2008-02-08/00013.owl"
    )
Exemple #8
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def test_load_RKB_rna_with_individuals():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/RKB/rna-with-individuals/v0.2/00773.owl"
    )
Exemple #9
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def test_load_RobertsFamily():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/RobertsFamily/2009-09-03/00775.owl"
    )
Exemple #10
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def test_load_AEO():
    Ontology("rdf/uri",
             "http://krr-nas.cs.ox.ac.uk/ontologies/lib/AEO/v3.7/00002.owl")
Exemple #11
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def test_load_ProPreO():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/ProPreO/2008-02-09/00772.owl"
    )
Exemple #12
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def test_load_OBO_AERO():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/OBO/AERO/2012-10-12/00351.owl"
    )
Exemple #13
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def test_load_OBI():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/OBI/2010-03-04/00350.owl")
Exemple #14
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def test_load_LUBM():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/LUBM/lubm/2009-05-29/00347.owl"
    )
Exemple #15
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def test_load_BAMS_neuron_ontology():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/BAMS/neuron-ontology/2009-10-28/00006.owl"
    )
Exemple #16
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def test_load_SEMINTEC():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/SEMINTEC/bigFile/2008-02-08/00776.owl"
    )
Exemple #17
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def test_load1():
    Ontology("rdf/uri",
             "https://protege.stanford.edu/ontologies/pizza/pizza.owl")
Exemple #18
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def test_load_SNOMED():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/SNOMED/2014-09-01/00795.owl"
    )
Exemple #19
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def test_load_biopax_level3():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/BioPAX/biopax-level3/v1.0/00012.owl"
    )
Exemple #20
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def test_load_VICODI():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/VICODI/vicodi_all/2008-02-08/00779.owl"
    )
Exemple #21
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def test_load_DOLCE_DLP_397():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/DOLCE/DLP_397/2008-02-08/00014.owl"
    )
Exemple #22
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def test_load_WINE_food():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/WINE/food/2004-02-10/00781.owl"
    )
Exemple #23
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def test_load_DOLCE_ExtendedDnS():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/DOLCE/ExtendedDnS/2008-02-08/00016.owl"
    )
Exemple #24
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def test_load_WINE_wine():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/WINE/wine/2004-02-10/00782.owl"
    )
Exemple #25
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def test_load_ACGT():
    Ontology("rdf/uri",
             "http://krr-nas.cs.ox.ac.uk/ontologies/lib/ACGT/v1.0/00001.owl")
Exemple #26
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def test_load_BAMS():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/BAMS/bams-from-swanson-98-4-5-07.from-web/2009-10-28/00003.owl"
    )
Exemple #27
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def test_load_GALEN():
    Ontology(
        "rdf/uri",
        "http://krr-nas.cs.ox.ac.uk/ontologies/lib/GALEN/galen-module1/2008-02-05/00035.owl"
    )
Exemple #28
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def onto():
    return Ontology(
        "cnl/string",
        "World says Hello. Hello is a word. Every impala is an animal."
        " Every omnivore is an animal. Test is an impala.")