def __init__(self, task_id, concept_id, *args, **kwargs):
super(ConceptContrastForm, self).__init__(*args, **kwargs)
tasks = Task()
contrasts = tasks.get_relation(task_id, "HASCONTRAST")
choices = [(x['id'], x['name']) for x in contrasts]
self.fields['contrasts'] = forms.ChoiceField(choices=choices)
self.helper = FormHelper()
self.helper.add_input(Submit('submit', 'Submit'))
self.helper.add_input(Reset('battery-cancel', 'Cancel', type="button"))
self.helper.form_action = reverse('add_concept_contrast',
kwargs={
'uid': concept_id,
'tid': task_id
})
def test_add_task_indicator(self):
task = Task()
tsk = task.create('test_add_task_indicator', {'prop': 'prop'})
self.assertTrue(
self.client.login(username=self.user.username,
password=self.password))
data = {
'type': 'add_task_indicator',
}
response = self.client.post(
reverse('add_task_indicator',
kwargs={'task_id': tsk.properties['id']}), data)
self.assertEqual(response.status_code, 200)
ind = task.get_relation(tsk.properties['id'], "HASINDICATOR")
self.assertEqual(len(ind), 1)
self.assertEqual(ind[0]['name'], 'add_task_indicator')
tsk.delete_related()
tsk.delete()
ind = graph.find_one("indicator", "id", ind[0]['id'])
def test_add_task_dataset(self):
task = Task()
tsk = task.create('test_add_task_dataset', {'prop': 'prop'})
self.assertTrue(
self.client.login(username=self.user.username,
password=self.password))
data = {
'dataset_uri': 'http://example.com',
'dataset_name': 'add_task_dataset',
}
response = self.client.post(
reverse('add_task_dataset',
kwargs={'task_id': tsk.properties['id']}), data)
self.assertEqual(response.status_code, 200)
ds = task.get_relation(tsk.properties['id'], "HASEXTERNALDATASET")
self.assertEqual(len(ds), 1)
self.assertEqual(ds[0]['name'], 'add_task_dataset')
tsk.delete_related()
tsk.delete()
ds = graph.find_one("external_dataset", "id", ds[0]['id'])
def __init__(self, task_id, *args, **kwargs):
super(TaskConceptForm, self).__init__(*args, **kwargs)
concept = Concept()
tasks = Task()
contrasts = tasks.get_relation(task_id, "HASCONTRAST")
cont_choices = [(x['id'], x['name']) for x in contrasts]
self.fields['concept-contrasts'] = forms.ChoiceField(
choices=cont_choices)
concept_choices = [(x['id'], x['name']) for x in concept.all()]
self.fields['concept'] = forms.ChoiceField(choices=concept_choices)
self.helper = FormHelper()
self.helper.attrs = {'id': 'concept-form'}
self.helper.form_class = "hidden"
self.helper.form_action = reverse('add_task_concept',
kwargs={'uid': task_id})
self.helper.add_input(Submit('submit', 'Submit'))
self.helper.add_input(Reset('task-concept-cancel', 'Cancel'))
def test_add_task_implementation(self):
task = Task()
tsk = task.create('test_add_task_implementation', {'prop': 'prop'})
self.assertTrue(
self.client.login(username=self.user.username,
password=self.password))
data = {
'implementation_uri': 'http://example.com',
'implementation_name': 'add_task_implementation',
'implementation_description': 'task imp desc'
}
response = self.client.post(
reverse('add_task_implementation',
kwargs={'task_id': tsk.properties['id']}), data)
self.assertEqual(response.status_code, 200)
imp = task.get_relation(tsk.properties['id'], "HASIMPLEMENTATION")
self.assertEqual(len(imp), 1)
self.assertEqual(imp[0]['name'], 'add_task_implementation')
tsk.delete_related()
tsk.delete()
imp = graph.find_one("implementation", "id", imp[0]['id'])
def __init__(self, task_id, *args, **kwargs):
super(TaskDisorderForm, self).__init__(*args, **kwargs)
disorders = Disorder()
behaviors = query.Behavior()
traits = query.Trait()
tasks = Task()
contrasts = tasks.get_relation(task_id, "HASCONTRAST")
cont_choices = [(x['id'], x['name']) for x in contrasts]
self.fields['contrasts'] = forms.ChoiceField(choices=cont_choices)
pheno_choices = []
pheno_choices.extend([(x['id'], ''.join([x['name'], " (Disorder)"]))
for x in disorders.all()])
pheno_choices.extend([(x['id'], ''.join([x['name'], " (Behavior)"]))
for x in behaviors.all()])
pheno_choices.extend([(x['id'], ''.join([x['name'], " (Trait)"]))
for x in traits.all()])
self.fields['disorders'] = forms.ChoiceField(choices=pheno_choices)
self.helper = FormHelper()
self.helper.form_tag = False
self.helper.add_input(Submit('submit', 'Submit'))
self.helper.add_input(Reset('task-disorder-cancel', 'Cancel'))
