def main():
#FIXME, keep the rest, but need a new function from my own dictionary to build my records
g = makeGraph('cell-merge', PREFIXES)
#for i in range(0,len(keys)):
#for j in range(0,len(js['LABELS'][0])):
#print(js.keys())
keyList = []
for prefix, outer_identifiers in data.items():
if 'nlx_only' == prefix:
continue
for id_ in outer_identifiers:
pre = prefix + ':' + id_
#if id_ not in js.keys():
#keyList.append(id_)
#continue
#if id_ == "nifext_128":
#id_ == "sao1736323572"
columns = js[id_][0]
#print('num columns', len(columns), id_)
for index, label in enumerate(js['LABELS']):
mid = label
#print(mid)
if 'nlx_only' == prefix:
right = columns
else:
right = columns[index]
#print(right)
if not right:
continue
#print(pre, mid, right)
if ':' in right:
right = right.replace(':', '')
if ' ' in mid:
mid = mid.replace(' ', '_')
if type(right) == list:
right = str(right)
node = make_node(pre, mid, right)
#print(node)
g.add_node(*node)
continue
g.write()
def main():
#FIXME, keep the rest, but need a new function from my own dictionary to build my records
g = makeGraph('cell-merge', PREFIXES)
#for i in range(0,len(keys)):
#for j in range(0,len(js['LABELS'][0])):
#print(js.keys())
keyList=[]
for prefix, outer_identifiers in data.items():
if 'nlx_only' == prefix:
continue
for id_ in outer_identifiers:
pre = prefix + ':' + id_
#if id_ not in js.keys():
#keyList.append(id_)
#continue
#if id_ == "nifext_128":
#id_ == "sao1736323572"
columns = js[id_][0]
#print('num columns', len(columns), id_)
for index, label in enumerate(js['LABELS']):
mid = label
#print(mid)
if 'nlx_only' == prefix:
right = columns
else:
right = columns[index]
#print(right)
if not right:
continue
#print(pre, mid, right)
if ':' in right:
right=right.replace(':','')
if ' ' in mid:
mid=mid.replace(' ','_')
if type(right)==list:
right=str(right)
node = make_node(pre, mid, right)
#print(node)
g.add_node(*node)
continue
g.write()
layer_rows_dict = {a[lli['Id']]: l_trans(a) for a in layer_rows}
species_rows_dict = {a[sli['Id']]: s_trans(a) for a in species_rows}
print(missing)
#print(cell_rows_dict.keys())
def add_elements(record, rows, labels, id_):
if id_ in rows:
for label, element in zip(labels, rows[id_]):
if element:
record.append((label, element))
output = {}
scigraph = set()
for prefix, outer_identifiers in data.items():
for outer_identifier in outer_identifiers:
record = []
# right now DNE duplicate rows
record.append(('curie', prefix + ':' + outer_identifier))
if outer_identifier in cell_rows_dict:
add_elements(record, cell_rows_dict, cell_labels, outer_identifier)
elif outer_identifier in brain_rows_dict:
add_elements(record, brain_rows_dict, brain_labels,
outer_identifier)
elif outer_identifier in layer_rows_dict:
add_elements(record, layer_rows_dict, layer_labels,
outer_identifier)
else:
raise TypeError('WHAT ????????????????')
#missing.append(outer_identifier)
layer_rows_dict = {a[lli["Id"]]: l_trans(a) for a in layer_rows}
species_rows_dict = {a[sli["Id"]]: s_trans(a) for a in species_rows}
print(missing)
# print(cell_rows_dict.keys())
def add_elements(record, rows, labels, id_):
if id_ in rows:
for label, element in zip(labels, rows[id_]):
if element:
record.append((label, element))
output = {}
scigraph = set()
for prefix, outer_identifiers in data.items():
for outer_identifier in outer_identifiers:
record = []
# right now DNE duplicate rows
record.append(("curie", prefix + ":" + outer_identifier))
if outer_identifier in cell_rows_dict:
add_elements(record, cell_rows_dict, cell_labels, outer_identifier)
elif outer_identifier in brain_rows_dict:
add_elements(record, brain_rows_dict, brain_labels, outer_identifier)
elif outer_identifier in layer_rows_dict:
add_elements(record, layer_rows_dict, layer_labels, outer_identifier)
else:
raise TypeError("WHAT ????????????????")
# missing.append(outer_identifier)
# record.extend(['' for a in new_labels])
