class FooDevice(BaseDevice):
state = State(default='standby')
no_write = Parameter()
foo = Quantity(q.m, check=check(source='*', target='moved'))
bar = Quantity(q.m)
test = Quantity(q.m, fset=_test_setter, fget=_test_getter)
def __init__(self, default):
super(FooDevice, self).__init__()
self._value = default
self._param_value = 0 * q.mm
self._test_value = 0 * q.mm
async def _get_foo(self):
return self._value
@transition(target='moved')
async def _set_foo(self, value):
self._value = value
async def _get_bar(self):
return 5 * q.m
param = Parameter(fget=_get_foo, fset=_set_foo)
async def _get_param(self):
return self._param_value
async def _set_param(self, value):
self._param_value = value
param = Parameter(fget=_get_param, fset=_set_param)
def __init__(self, port_id, name, fget=None, fset=None, doc=None):
if fget is None:
new_fget = None
else:
new_fget = lambda: fget(port_id)
if fset is None:
new_fset = None
else:
new_fset = lambda value: fset(port_id, value)
Parameter.__init__(self, name, fget=new_fget, fset=new_fset, doc=doc)
self.port_id = port_id
def __init__(self, param, feedback):
params = [
Parameter('minimum', doc="Left bound of the interval"),
Parameter('maximum', doc="Right bound of the interval"),
Parameter('intervals', doc="Number of intervals")
]
super(Scanner, self).__init__(params)
self.intervals = 64
self.param = param
self.feedback = feedback
def __init__(self):
def setter(value):
pass
def getter():
return 1
self.params = [Parameter('readonly', fget=getter),
Parameter('writeonly', fset=setter)]
super(MockDevice, self).__init__(self.params)
def __init__(self, calibration):
params = [
Parameter("energy",
self._get_energy,
self._set_energy,
q.eV,
doc="Monochromatic energy"),
Parameter("wavelength",
self._get_wavelength,
self._set_wavelength,
q.nanometer,
doc="Monochromatic wavelength")
]
super(Monochromator, self).__init__(params)
self._calibration = calibration
def __init__(self, parameters=None):
super(Device, self).__init__(parameters)
self.add_parameter(Parameter('state', self._get_state,
owner_only=True))
self._lock = threading.Lock()
self._states = set([self.NA])
self._state = self.NA
def __init__(self, directory):
# Let users change the directory
self.directory = directory
params = [
Parameter('trigger-mode',
lower=FileCamera.TRIGGER_AUTO,
upper=FileCamera.TRIGGER_SOFTWARE)
]
super(FileCamera, self).__init__(params)
self._frame_rate = None
self._recording = None
self._index = -1
self._start_time = None
self._stop_time = None
self._trigger = Event()
self._trigger_time = None
self.roi_x = 0
self.roi_y = 0
self.roi_width = None
self.roi_height = None
self._files = [
os.path.join(directory, file_name)
for file_name in sorted(os.listdir(directory))
]
class SpiralMixin(Parameterizable):
"""
Mixin for spiral tomography.
"""
start_position_vertical = Quantity(q.mm)
"""Initial position of the vertical motor."""
vertical_shift_per_tomogram = Quantity(q.mm)
"""Vertical shift per tomogram."""
sample_height = Quantity(q.mm)
"""Height of the sample. *vertical_motor* will be scanned from *start_position_vertical* to
*sample_height* + *vertical_shift_per_tomogram* to sample the whole specimen.
"""
num_tomograms = Parameter()
"""Number of tomograms, that are required to cover the whole specimen."""
def __init__(self, vertical_motor, start_position_vertical, sample_height,
vertical_shift_per_tomogram):
"""
:param vertical_motor: LinearMotor to translate the sample along the tomographic axis.
:type vertical_motor: concert.devices.motors.base.LinearMotor
:param start_position_vertical: Start position of *vertical_motor*.
:type start_position_vertical: q.mm
:param sample_height: Height of the sample.
:type sample_height: q.mm
:param vertical_shift_per_tomogram: Distance *vertical_motor* is translated during one
*angular_range*.
:type vertical_shift_per_tomogram: q.mm
"""
self._start_position_vertical = start_position_vertical
self._vertical_shift_per_tomogram = vertical_shift_per_tomogram
self._sample_height = sample_height
self._vertical_motor = vertical_motor
Parameterizable.__init__(self)
async def _get_start_position_vertical(self):
return self._start_position_vertical
async def _get_num_tomograms(self):
shift = await self.get_vertical_shift_per_tomogram()
height = await self.get_sample_height()
return abs(height / shift).to_base_units().magnitude + 1
async def _get_vertical_shift_per_tomogram(self):
return self._vertical_shift_per_tomogram
async def _get_sample_height(self):
return self._sample_height
async def _set_start_position_vertical(self, position):
self._start_position_vertical = position
async def _set_sample_height(self, height):
self._sample_height = height
async def _set_vertical_shift_per_tomogram(self, shift):
self._vertical_shift_per_tomogram = shift
class MockDevice(Device):
readonly = Parameter()
writeonly = Parameter()
def __init__(self):
super(MockDevice, self).__init__()
self.aborted = False
async def _get_readonly(self):
return 1
async def _set_writeonly(self, value):
pass
async def _emergency_stop(self):
self.aborted = True
def __init__(self):
params = [
Parameter('current',
fget=self._get_current,
unit=q.mA,
doc="Current of the ring"),
Parameter('energy',
fget=self._get_energy,
unit=q.MeV,
doc="Energy of the ring"),
Parameter('lifetime',
fget=self._get_lifetime,
unit=q.h,
doc="Lifetime of the ring")
]
super(StorageRing, self).__init__(params)
def test_write_only_parameter(self):
parameter = Parameter('foo', fset=empty_setter)
self.assertTrue(parameter.is_writable())
self.assertFalse(parameter.is_readable())
parameter.set(1).result()
with self.assertRaises(ReadAccessError) as ctx:
parameter.get().result()
self.assertEqual("parameter `foo' cannot be read", str(ctx.exception))
def __init__(self, parameters=None):
# We have to create the lock early on because it will be accessed in
# any add_parameter calls, especially those in the Parameterizable base
# class
self._lock = threading.Lock()
super(Device, self).__init__(parameters)
self.add_parameter(Parameter('state', self._get_state))
self._states = set([self.NA])
self._state = self.NA
def __init__(self, calibration):
params = [
Parameter('flow_rate',
fget=self._get_calibrated_flow_rate,
fset=self._set_calibrated_flow_rate,
unit=q.l / q.s,
doc="Pump flow rate.")
]
super(Pump, self).__init__(params)
self._calibration = calibration
self._states = self._states.union(set([self.STANDBY, self.PUMPING]))
def test_hard_limit(self):
def setter(value):
pass
class Limited(object):
in_limit = False
def __call__(self):
return self.in_limit
in_limit = Limited()
parameter = Parameter('foo', fset=setter, in_hard_limit=in_limit)
parameter.set(0).result()
parameter.set(0.5).result()
parameter.set(1).result()
with self.assertRaises(HardLimitError):
in_limit.in_limit = True
parameter.set(1.5).result()
class PyplotImageViewer(ImageViewerBase):
"""Dynamic image viewer using matplotlib.
.. py:attribute:: imshow_kwargs
matplotlib's imshow keyword arguments
.. py:attribute:: fast
Whether to use the fast version without colorbar
"""
colormap = Parameter(help='Colormap')
def __init__(self, imshow_kwargs: dict = None, fast: bool = True, limits: str = 'stream',
downsampling: int = 1, title: str = "", show_refresh_rate: bool = False,
force: bool = False):
super().__init__(limits=limits, downsampling=downsampling, title=title,
show_refresh_rate=show_refresh_rate, force=force)
self._has_colorbar = not fast
self._imshow_kwargs = {} if imshow_kwargs is None else imshow_kwargs
self._make_imshow_defaults()
def _make_updater(self):
if self._has_colorbar:
return _PyplotImageUpdater(
self._queue, self._imshow_kwargs, limits=self._limits, title=self._title,
show_refresh_rate=self._show_refresh_rate
)
return _SimplePyplotImageUpdater(
self._queue, self._imshow_kwargs, limits=self._limits, title=self._title,
show_refresh_rate=self._show_refresh_rate
)
def reset(self):
"""Reset the viewer's state."""
self._queue.put(('reset', None))
def _make_imshow_defaults(self):
"""Override matplotlib's image showing defafults."""
if "cmap" not in self._imshow_kwargs:
self._imshow_kwargs["cmap"] = 'gray'
self._colormap = self._imshow_kwargs["cmap"]
if "interpolation" not in self._imshow_kwargs:
self._imshow_kwargs["interpolation"] = "nearest"
async def _get_colormap(self):
return self._colormap
async def _set_colormap(self, colormap):
"""Set colormp of the shown image to *colormap*."""
self._queue.put(('colormap', colormap))
def __init__(self, pos=(0., 0.), imgsize=(640, 480)):
params = [
Parameter('exposure-time', unit=q.s),
Parameter('roi-width'),
Parameter('roi-height'),
Parameter('sensor-pixel-width', unit=q.micrometer),
Parameter('sensor-pixel-height', unit=q.micrometer)
]
super(DummyCamera, self).__init__(params)
self.exposure_time = 1 * q.ms
self.sensor_pixel_width = 5 * q.micrometer
self.sensor_pixel_height = 5 * q.micrometer
self._sigma = 10
self._rel_sec = 1.
self._m_ax = [1, 0]
self._imgsize = imgsize
self._noise = imgnoise
self._frm_mode = 'generate'
self._coord = [pos[0] * q.meter, pos[1] * q.meter]
self._coord_at_trigger = [pos[0] * q.meter, pos[1] * q.meter]
def __init__(self, camera, rotary_stage, prepare_dark_scan,
prepare_flat_scan, prepare_proj_scan):
params = [Parameter('angle', unit=q.deg)]
self.camera = camera
self.rotary_stage = rotary_stage
self.prepare_dark_scan = prepare_dark_scan
self.prepare_flat_scan = prepare_flat_scan
self.prepare_proj_scan = prepare_proj_scan
self.num_projections = 4
super(StepTomoScanner, self).__init__(params)
def _create_parameter(node, prop):
from gi.repository import GObject
getter, setter = None, None
if prop.flags & GObject.ParamFlags.READABLE:
getter = _create_getter(node, prop.name)
if prop.flags & GObject.ParamFlags.WRITABLE:
setter = _create_setter(node, prop.name)
param = Parameter(prop.name, getter, setter, doc=prop.blurb)
return param
def test_soft_limit(self):
parameter = Parameter('foo',
fset=empty_setter,
unit=q.mm,
lower=2 * q.mm,
upper=4 * q.mm)
parameter.set(2.3 * q.mm).wait()
parameter.set(2 * q.mm).wait()
parameter.set(4 * q.mm).wait()
self.assertRaises(SoftLimitError, parameter.set(4.2 * q.mm).wait)
def __init__(self, background=None):
params = [
Parameter('exposure-time', unit=q.s),
Parameter('roi-width'),
Parameter('roi-height'),
Parameter('sensor-pixel-width', unit=q.micrometer),
Parameter('sensor-pixel-height', unit=q.micrometer)
]
super(Camera, self).__init__(params)
self.exposure_time = 1 * q.ms
self.sensor_pixel_width = 5 * q.micrometer
self.sensor_pixel_height = 5 * q.micrometer
if background:
self.roi_width = background.shape[1]
self.roi_height = background.shape[0]
self._background = background
else:
shape = (640, 480)
self.roi_width, self.roi_height = shape
self._background = np.ones(shape)
def test_read_only_parameter(self):
def getter():
return 0
parameter = Parameter('foo', fget=getter)
self.assertTrue(parameter.is_readable())
self.assertFalse(parameter.is_writable())
self.assertEqual(parameter.get().result(), 0)
with self.assertRaises(WriteAccessError) as ctx:
parameter.set(None).result()
self.assertEqual("parameter `foo' cannot be written",
str(ctx.exception))
class DummyDevice(Device):
"""A dummy device."""
value = Parameter()
def __init__(self):
super(DummyDevice, self).__init__()
self._value = None
def _get_value(self):
"""Get the real value."""
return self._value
def _set_value(self, value):
"""The real value setter."""
self._value = value
@async
def do_nothing(self):
"""Do nothing."""
pass
def __init__(self, name):
from gi.repository import GObject, Uca
self._manager = Uca.PluginManager()
self._data = None
self._array = None
try:
self.camera = self._manager.get_camerav(name, [])
except:
raise ValueError("`{0}' is not a valid camera".format(name))
units = {
Uca.Unit.METER: q.m,
Uca.Unit.SECOND: q.s,
Uca.Unit.DEGREE_CELSIUS: q.Celsius,
Uca.Unit.COUNT: q.count
}
parameters = []
for prop in self.camera.props:
getter, setter, unit = None, None, None
uca_unit = self.camera.get_unit(prop.name)
if uca_unit in units:
unit = units[uca_unit]
if prop.flags & GObject.ParamFlags.READABLE:
getter = _new_getter_wrapper(self.camera, prop.name, unit)
if prop.flags & GObject.ParamFlags.WRITABLE:
setter = _new_setter_wrapper(self.camera, prop.name, unit)
parameter = Parameter(prop.name, getter, setter, unit)
parameters.append(parameter)
super(Camera, self).__init__(parameters)
class Experiment(Parameterizable):
"""
Experiment base class. An experiment can be run multiple times with the output data and log
stored on disk. You can prepare every run by :meth:`.prepare` and finsh the run by
:meth:`.finish`. These methods do nothing by default. They can be useful e.g. if you need to
reinitialize some experiment parts or want to attach some logging output.
.. py:attribute:: acquisitions
:noindex:
A list of acquisitions this experiment is composed of
.. py:attribute:: walker
A :class:`concert.storage.Walker` descends to a data set specific for every run if given
.. py:attribute:: separate_scans
If True, *walker* does not descend to data sets based on specific runs
.. py:attribute:: name_fmt
Since experiment can be run multiple times each iteration will have a separate entry
on the disk. The entry consists of a name and a number of the current iteration, so the
parameter is a formattable string.
"""
iteration = Parameter()
separate_scans = Parameter()
name_fmt = Parameter()
state = State(default='standby')
log_level = Selection(['critical', 'error', 'warning', 'info', 'debug'])
def __init__(self,
acquisitions,
walker=None,
separate_scans=True,
name_fmt='scan_{:>04}'):
self._acquisitions = []
for acquisition in acquisitions:
self.add(acquisition)
self.walker = walker
self._separate_scans = separate_scans
self._name_fmt = name_fmt
self._iteration = 1
self.log = LOG
Parameterizable.__init__(self)
if separate_scans and walker:
# The data is not supposed to be overwritten, so find an iteration which
# hasn't been used yet
while self.walker.exists(self._name_fmt.format(self._iteration)):
self._iteration += 1
async def _get_iteration(self):
return self._iteration
async def _set_iteration(self, iteration):
self._iteration = iteration
async def _get_separate_scans(self):
return self._separate_scans
async def _set_separate_scans(self, separate_scans):
self._separate_scans = separate_scans
async def _get_name_fmt(self):
return self._name_fmt
async def _set_name_fmt(self, fmt):
self._name_fmt = fmt
async def _get_log_level(self):
return logging.getLevelName(self.log.getEffectiveLevel()).lower()
async def _set_log_level(self, level):
self.log.setLevel(level.upper())
async def prepare(self):
"""Gets executed before every experiment run."""
pass
async def finish(self):
"""Gets executed after every experiment run."""
pass
@property
def acquisitions(self):
"""Acquisitions is a read-only attribute which has to be manipulated by explicit methods
provided by this class.
"""
return tuple(self._acquisitions)
def add(self, acquisition):
"""
Add *acquisition* to the acquisition list and make it accessible as
an attribute::
frames = Acquisition(...)
experiment.add(frames)
# This is possible
experiment.frames
"""
self._acquisitions.append(acquisition)
setattr(self, acquisition.name, acquisition)
def remove(self, acquisition):
"""Remove *acquisition* from experiment."""
self._acquisitions.remove(acquisition)
delattr(self, acquisition.name)
def swap(self, first, second):
"""
Swap acquisition *first* with *second*. If there are more occurences
of either of them then the ones which are found first in the acquisitions
list are swapped.
"""
if first not in self._acquisitions or second not in self._acquisitions:
raise ValueError(
"Both acquisitions must be part of the experiment")
first_index = self._acquisitions.index(first)
second_index = self._acquisitions.index(second)
self._acquisitions[first_index] = second
self._acquisitions[second_index] = first
def get_acquisition(self, name):
"""
Get acquisition by its *name*. In case there are more like it, the first
one is returned.
"""
for acq in self._acquisitions:
if acq.name == name:
return acq
raise ExperimentError(
"Acquisition with name `{}' not found".format(name))
async def acquire(self):
"""
Acquire data by running the acquisitions. This is the method which implements
the data acquisition and should be overriden if more functionality is required,
unlike :meth:`~.Experiment.run`.
"""
for acq in wrap_iterable(self._acquisitions):
if await self.get_state() != 'running':
break
await acq()
@background
@check(source=['standby', 'error'], target='standby')
@transition(immediate='running', target='standby')
async def run(self):
start_time = time.time()
handler = None
iteration = await self.get_iteration()
separate_scans = await self.get_separate_scans()
try:
if self.walker:
if separate_scans:
self.walker.descend(
(await self.get_name_fmt()).format(iteration))
if os.path.exists(self.walker.current):
# We might have a dummy walker which doesn't create the directory
handler = logging.FileHandler(
os.path.join(self.walker.current, 'experiment.log'))
formatter = logging.Formatter(
'%(asctime)s - %(name)s - %(levelname)s '
'- %(message)s')
handler.setFormatter(formatter)
self.log.addHandler(handler)
self.log.info(await self.info_table)
LOG.debug('Experiment iteration %d start', iteration)
await self.prepare()
await self.acquire()
except asyncio.CancelledError:
# This is normal, no special state needed -> standby
LOG.warn('Experiment cancelled')
except Exception as e:
# Something bad happened and we can't know what, so set the state to error
LOG.warn(f"Error `{e}' while running experiment")
raise StateError('error', msg=str(e))
except KeyboardInterrupt:
LOG.warn('Experiment cancelled by keyboard interrupt')
self._state_value = 'standby'
raise
finally:
try:
await self.finish()
except Exception as e:
LOG.warn(f"Error `{e}' while finalizing experiment")
raise StateError('error', msg=str(e))
finally:
if separate_scans and self.walker:
self.walker.ascend()
LOG.debug('Experiment iteration %d duration: %.2f s',
iteration,
time.time() - start_time)
if handler:
handler.close()
self.log.removeHandler(handler)
await self.set_iteration(iteration + 1)
class Camera(Device):
"""Base class for remotely controllable cameras.
.. py:attribute:: frame-rate
Frame rate of acquisition in q.count per time unit.
"""
trigger_sources = Bunch(['AUTO', 'SOFTWARE', 'EXTERNAL'])
trigger_types = Bunch(['EDGE', 'LEVEL'])
state = State(default='standby')
frame_rate = Quantity(1 / q.second, help="Frame frequency")
trigger_source = Parameter(help="Trigger source")
def __init__(self):
super(Camera, self).__init__()
self.convert = identity
@background
@check(source='standby', target='recording')
async def start_recording(self):
"""
start_recording()
Start recording frames.
"""
await self._record_real()
@background
@check(source='recording', target='standby')
async def stop_recording(self):
"""
stop_recording()
Stop recording frames.
"""
await self._stop_real()
@contextlib.asynccontextmanager
async def recording(self):
"""
recording()
A context manager for starting and stopping the camera.
In general it is used with the ``async with`` keyword like this::
async with camera.recording():
frame = await camera.grab()
"""
await self.start_recording()
try:
yield
finally:
LOG.log(AIODEBUG, 'stop recording in recording()')
await self.stop_recording()
@background
async def trigger(self):
"""Trigger a frame if possible."""
await self._trigger_real()
@background
async def grab(self):
"""Return a NumPy array with data of the current frame."""
return self.convert(await self._grab_real())
async def stream(self):
"""
stream()
Grab frames continuously yield them. This is an async generator.
"""
await self.set_trigger_source(self.trigger_sources.AUTO)
await self.start_recording()
while await self.get_state() == 'recording':
yield await self.grab()
async def _get_trigger_source(self):
raise AccessorNotImplementedError
async def _set_trigger_source(self, source):
raise AccessorNotImplementedError
async def _record_real(self):
raise AccessorNotImplementedError
async def _stop_real(self):
raise AccessorNotImplementedError
async def _trigger_real(self):
raise AccessorNotImplementedError
async def _grab_real(self):
raise AccessorNotImplementedError
def __init__(self, name, params=None):
"""
Create a new libuca camera.
The *name* is passed to the uca plugin manager.
:raises CameraError: In case camera *name* does not exist.
"""
super(Camera, self).__init__()
import gi
gi.require_version('Uca', '2.0')
from gi.repository import GObject, GLib, Uca
self._manager = Uca.PluginManager()
params = params if params else {}
try:
self.uca = self._manager.get_camerah(name, params)
except GLib.GError as ge:
raise base.CameraError(str(ge))
except Exception:
raise base.CameraError("`{0}' is not a valid camera".format(name))
units = {
Uca.Unit.METER: q.m,
Uca.Unit.SECOND: q.s,
Uca.Unit.DEGREE_CELSIUS: q.celsius,
Uca.Unit.COUNT: q.dimensionless,
Uca.Unit.PIXEL: q.pixel,
}
parameters = {}
for prop in self.uca.props:
if prop.name in ('trigger-source', 'trigger-type',
'frames-per-second'):
continue
getter, setter, unit = None, None, None
uca_unit = self.uca.get_unit(prop.name)
if uca_unit in units:
unit = units[uca_unit]
if prop.flags & GObject.ParamFlags.READABLE:
getter = _new_getter_wrapper(prop.name, unit)
if prop.flags & GObject.ParamFlags.WRITABLE:
setter = _new_setter_wrapper(prop.name, unit)
name = prop.name.replace('-', '_')
if uca_unit in units:
parameters[name] = Quantity(unit,
fget=getter,
fset=setter,
help=prop.blurb)
else:
parameters[name] = Parameter(fget=getter,
fset=setter,
help=prop.blurb)
if parameters:
self.install_parameters(parameters)
class _Dummy(object):
pass
setattr(self.uca, 'enum_values', _Dummy())
def get_enum_bunch(enum):
enum_map = {}
for key, value in list(enum.__enum_values__.items()):
name = value.value_nick.upper().replace('-', '_')
enum_map[name] = key
return Bunch(enum_map)
for prop in self.uca.props:
if hasattr(prop, 'enum_class'):
setattr(self.uca.enum_values, prop.name.replace('-', '_'),
get_enum_bunch(prop.default_value))
self._uca_get_frame_rate = _new_getter_wrapper('frames-per-second')
self._uca_set_frame_rate = _new_setter_wrapper('frames-per-second')
# Invert the uca trigger source dict in order to return concert values
trigger_dict = self.uca.enum_values.trigger_source.__dict__
self._uca_to_concert_trigger = {
v: k
for k, v in list(trigger_dict.items())
}
self._uca_get_trigger = _new_getter_wrapper('trigger-source')
self._uca_set_trigger = _new_setter_wrapper('trigger-source')
self._record_shape = None
self._record_dtype = None
class ViewerBase(Parameterizable):
"""
A base class for data viewer which sends commands to a backend-specific updater which runs in a
separate process.
"""
force = Parameter(help='Make sure every item is displayed')
def __init__(self, force: bool = False):
super().__init__()
self._force = force
self._queue = _MP_CTX.Queue()
# This prevents hanging in the case we exit the session after something is put in the queue
# and before it is consumed.
self._queue.cancel_join_thread()
self._paused = False
# To be set up by an actual implementation which runs the drawing backed in a separate
# process
self._proc = None
# __del__ is not going to help because it's never called from our concert session
async def _set_force(self, value):
self._force = value
async def _get_force(self):
return self._force
@background
async def __call__(self, producer, size=0, force=None):
"""
Display stream from *producer*. If *size* is specified, stop after displaying *size* items.
If *force* is True make sure the item is displayed, if False it may be skipped if there is
something in the queue waiting to be shown, if it is None, the viewer's *force* parameter is
used.
"""
i = 0
async for item in producer:
if not size or i < size:
await self.show(item, force=self._force if force is None else force)
i += 1
@background
async def show(self, item, force=False):
"""Push *item* to the queue for display in a separate proces. If *force* is True make sure
the item is displayed, otherwise it may be skipped if there is something in the queue
waiting to be shown.
"""
# If the circumstances allow it, push the item to the queue for display
# This must happen before instantiation of the updater below because _show may raise
# exception, in which case we don't want the updater to have started yet.
if not self._paused and (not self._queue.qsize() or force or not self._proc):
await run_in_executor(self._show, item)
# If there is no updater or it has been stopped, instantiate it and start it in a process.
if not (self._proc and self._proc.is_alive()):
updater = self._make_updater()
self._proc = _MP_CTX.Process(target=updater.run, daemon=True)
self._proc.start()
# Make sure that all control commands, like changing colormap, have been processed
while self._queue.qsize():
await asyncio.sleep(0.01)
def pause(self):
"""Pause, no images are dispayed but image commands work."""
self._paused = True
def resume(self):
"""Resume the viewer."""
self._paused = False
def _show(self, item):
"""Implementation of pushing *item* to the display queue."""
raise NotImplementedError
def _make_updater(self):
"""Updater factory method."""
raise NotImplementedError
class DummyDevice(Device):
"""A dummy device."""
position = Quantity(unit=q.mm)
sleep_time = Quantity(unit=q.s)
# Value with a check-decorated setter before it is bound to instance, so still a function
value = Parameter()
# value with check wrapping the bound method
cvalue = Parameter(check=check(source='*', target='standby'))
# Value set elsewhere
evalue = Parameter(fset=set_evalue,
fget=get_evalue,
check=check(source='*', target='standby'))
slow = Parameter()
state = State(default='standby')
def __init__(self, slow=None):
super(DummyDevice, self).__init__()
self._position = 1 * q.mm
self._value = 0
self._slow = slow
self._sleep_time = 0.5 * q.s
async def _get_sleep_time(self):
return self._sleep_time
async def _set_sleep_time(self, value):
self._sleep_time = value
async def _get_position(self):
return self._position
async def _set_position(self, value):
self._position = value
async def _get_slow(self):
try:
LOG.log(AIODEBUG, 'get slow start %s', self._slow)
await asyncio.sleep((await self.get_sleep_time()).magnitude)
LOG.log(AIODEBUG, 'get slow finish %s', self._slow)
return self._slow
except asyncio.CancelledError:
LOG.log(AIODEBUG, 'get slow cancelled %s', self._slow)
raise
except KeyboardInterrupt:
# do not scream
LOG.debug("KeyboardInterrupt caught while getting")
async def _set_slow(self, value):
try:
LOG.log(AIODEBUG, 'set slow start %s', value)
await asyncio.sleep((await self.get_sleep_time()).magnitude)
LOG.log(AIODEBUG, 'set slow finish %s', value)
self._slow = value
except asyncio.CancelledError:
LOG.log(AIODEBUG, 'set slow cancelled %s', value)
raise
async def _get_value(self):
"""Get the real value."""
return self._value
async def _get_target_value(self):
"""Get the real value."""
return self._value + 1
@check(source='standby', target=['standby', 'hard-limit'])
@transition(immediate='moving', target='standby')
async def _set_value(self, value):
"""The real value setter."""
self._value = value
async def _get_cvalue(self):
"""The real value setter."""
return self._value
async def _set_cvalue(self, value):
"""The real value setter."""
self._value = value
@background
async def do_nothing(self, value=None):
"""Do nothing. For testing task canellation."""
await self._do_nothing(value=value)
async def _do_nothing(self, value=None):
LOG.log(AIODEBUG, f'Start doing nothing: {value}')
try:
await asyncio.sleep(1)
LOG.log(AIODEBUG, f'Stop doing nothing: {value}')
return value
except asyncio.CancelledError:
LOG.log(AIODEBUG, f'Doing nothing cancelled: {value}')
raise
async def _emergency_stop(self):
LOG.debug('Emergency stop on a dummy device')
await asyncio.sleep(0.5)
self._state_value = 'aborted'
class ImageViewerBase(ViewerBase):
"""Backend-free base class for displaying images.
.. py:attribute:: limits
minimum and maximum gray value (black and white points). Can be a tuple (min, max), 'auto'
or 'stream'. When 'auto', limits are adjusted for every shown image, when 'stream', limits
are adjusted on every __call__.
.. py:attribute:: downsampling
Display every n-th pixel, which can speed up the viewer
.. py:attribute:: title
Image title
.. py:attribute:: show_refresh_rate
Whether or not to show refresh rate text directly embedded into the displayed image
"""
show_refresh_rate = Parameter(help='Display current refresh rate')
limits = Parameter(help='Black and white point')
downsampling = Parameter(help='Display only every n-th pixel')
def __init__(self, limits: str = 'stream', downsampling: int = 1, title: str = "",
show_refresh_rate: bool = False, force: bool = False):
super().__init__(force=force)
self._show_refresh_rate = show_refresh_rate
self._title = title
self._downsampling = downsampling
self._limits = limits
@background
async def __call__(self, producer: Callable, size: int = None, force: bool = None):
# In case limits are set to 'stream' we need to reset clim
self._queue.put(('clim', self._limits))
return await super().__call__(producer, size=None, force=force)
def _show(self, item):
self._queue.put(('image', item[::self._downsampling, ::self._downsampling]))
async def _get_downsampling(self):
return self._downsampling
async def _set_downsampling(self, value):
if value not in range(1, 21):
raise ValueError('Downsampling must be from interval [1, 20]')
self._downsampling = value
async def _get_limits(self):
return self._limits
async def _set_limits(self, limits):
"""
Minimum and maximum gray value (black and white points). Can be a tuple (min, max), 'auto'
or 'stream'. When 'auto', limits are adjusted for every shown image, when 'stream', limits
are adjusted on every __call__.
"""
if not (limits == 'auto' or limits == 'stream' or len(limits) == 2):
raise ViewerError("limits can be a tuple (min, max), 'auto' or 'stream'")
self._queue.put(('clim', limits))
self._limits = limits
async def _get_show_refresh_rate(self):
return self._show_refresh_rate
async def _set_show_refresh_rate(self, value):
if not isinstance(value, bool):
raise ValueError('boolean value expected')
self._queue.put(('show-fps', value))
self._show_refresh_rate = value
class PyplotViewer(ViewerBase):
"""
Dynamic plot viewer using matplotlib.
.. py:attribute:: style
One of matplotlib's linestyle format strings
.. py:attribute:: plt_kwargs
Keyword arguments accepted by matplotlib's plot()
.. py:attribute:: autoscale
If True, the axes limits will be expanded as needed by the new data,
otherwise the user needs to rescale the axes
.. py:attribute:: title
Plot title
"""
style = Parameter(help='Line style')
autoscale = Parameter(help='Autoscale view')
def __init__(self, style: str = "o", plot_kwargs: dict = None, autoscale: bool = True,
title: str = "", force: bool = False):
super().__init__(force=force)
self._autoscale = autoscale
self._style = style
self._plot_kwargs = plot_kwargs
self._title = title
def _show(self, item):
"""Unravel the *item* for x and y so that it is plotted correctly."""
try:
if len(item) != 2:
raise ValueError('Plotting accepts only (x, y) pairs')
except TypeError as exc:
raise ValueError('Plotting accepts only (x, y) pairs') from exc
if isinstance(item, q.Quantity):
item = item.magnitude
first, second = item
if isinstance(first, q.Quantity):
first = first.magnitude
if isinstance(second, q.Quantity):
second = second.magnitude
item = (first, second)
self._queue.put(('plot', item))
def _make_updater(self):
return _PyplotUpdater(self._queue, self._style, self._plot_kwargs,
self._autoscale, title=self._title)
def reset(self):
"""Clear the plotted data."""
self._queue.put(('clear', None))
async def _get_style(self):
return self._style
async def _set_style(self, style):
"""Set line style to *style*."""
self._queue.put(('style', style))
self._style = style
async def _get_autoscale(self):
return self._autoscale
async def _set_autoscale(self, autoscale):
"""Set *autoscale* on the axes, can be True or False."""
self._queue.put(('autoscale', autoscale))
self._autoscale = autoscale