def _validate(self):
errors = []
# Check that the program exists
useGPU = self.useGPU.get()
if not exists(getProgram(useGPU)):
errors.append("Binary '%s' does not exits. \n"
"Check configuration file: "
"~/.config/scipion/scipion.conf\n"
"and set GEMPICKER variablesproperly."
% getProgram(useGPU))
print "os.environ['GEMPICKER_HOME']", os.environ['GEMPICKER_HOME']
print "os.environ['GEMPICKER']", os.environ['GEMPICKER']
# Check that the number of input masks (in case of non-circular mask)
# should be the same of the number of references, if greater than one
if self.maskType == MASK_OBJECT:
n = len(self.inputMasks)
if n > 1 and n != self.inputReferences.get().getSize():
errors.append('If the number of input masks is greater than '
'one, it should be equal to the number of '
'references.')
value1 = round(self.thresholdLow,1)
value2 = round(self.thresholdHigh,1)
if (self.thresholdLow < self.thresholdHigh and
0.0 <= value1 <= 1.0 and 0.0 <= value2 <= 1.0):
pass
else:
errors.append('Wrong threshold values!')
return errors
def _validate(self):
errors = []
# Check that the program exists
program = getProgram()
if program is None:
errors.append(
"Missing variables GAUTOMATCH and/or GAUTOMATCH_HOME")
elif not os.path.exists(program):
errors.append("Binary '%s' does not exists.\n" % program)
# If there is any error at this point it is related to config variables
if errors:
errors.append(
"Check configuration file: ~/.config/scipion/scipion.conf")
errors.append(
"and set GAUTOMATCH and GAUTOMATCH_HOME variables properly.")
if program is not None:
errors.append("Current values:")
errors.append("GAUTOMATCH_HOME = %s" %
os.environ['GAUTOMATCH_HOME'])
errors.append("GAUTOMATCH = %s" % os.environ['GAUTOMATCH'])
if not self.localAvgMin < self.localAvgMax:
errors.append('Wrong values of local average cut-off!')
if self.exclusive:
if not self.inputBadCoords.get() and not self.inputDefects.get():
errors.append(
"You have to provide at least one set of coordinates ")
errors.append("for exclusive picking!")
return errors
def _validate(self):
errors = []
# Check that the program exists
program = getProgram()
if program is None:
errors.append(
"Missing variables GAUTOMATCH and/or GAUTOMATCH_HOME")
elif not os.path.exists(program):
errors.append("Binary '%s' does not exists.\n" % program)
# If there is any error at this point it is related to config variables
if errors:
errors.append("Check configuration file: "
"~/.config/scipion/scipion.conf")
errors.append("and set GAUTOMATCH and GAUTOMATCH_HOME "
"variables properly.")
if program is not None:
errors.append("Current values:")
errors.append("GAUTOMATCH_HOME = %s" %
os.environ['GAUTOMATCH_HOME'])
errors.append("GAUTOMATCH = %s" % os.environ['GAUTOMATCH'])
if not self.localAvgMin < self.localAvgMax:
errors.append('Wrong values of local average cut-off!')
if self.exclusive:
if not self.inputBadCoords.get() and not self.inputDefects.get():
errors.append("You have to provide at least "
"one set of coordinates ")
errors.append("for exclusive picking!")
nprocs = max(self.numberOfMpi.get(), self.numberOfThreads.get())
if nprocs < len(self.getGpuList()):
errors.append("Multiple GPUs can not be used by a single process. "
"Make sure you specify more processors than GPUs. ")
return errors
def _validate(self):
errors = []
# Check that the program exists
program = getProgram()
if program is None:
errors.append("Missing variables GAUTOMATCH and/or GAUTOMATCH_HOME")
elif not os.path.exists(program):
errors.append("Binary '%s' does not exists.\n" % program)
# If there is any error at this point it is related to config variables
if errors:
errors.append("Check configuration file: "
"~/.config/scipion/scipion.conf")
errors.append("and set GAUTOMATCH and GAUTOMATCH_HOME "
"variables properly.")
if program is not None:
errors.append("Current values:")
errors.append("GAUTOMATCH_HOME = %s"
% os.environ['GAUTOMATCH_HOME'])
errors.append("GAUTOMATCH = %s" % os.environ['GAUTOMATCH'])
if not self.localAvgMin < self.localAvgMax:
errors.append('Wrong values of local average cut-off!')
if self.exclusive:
if not self.inputBadCoords.get() and not self.inputDefects.get():
errors.append("You have to provide at least "
"one set of coordinates ")
errors.append("for exclusive picking!")
nprocs = max(self.numberOfMpi.get(), self.numberOfThreads.get())
if nprocs < len(self.getGpuList()):
errors.append("Multiple GPUs can not be used by a single process. "
"Make sure you specify more processors than GPUs. ")
return errors