def test_add_references_task(self):
collection = OrganizationCollectionFactory()
concept1 = ConceptFactory()
concept2 = ConceptFactory()
mapping1 = MappingFactory(parent=concept2.parent,
from_concept=concept2.get_latest_version(),
to_concept=concept1.get_latest_version())
mapping2 = MappingFactory()
added_references, errors = add_references(
collection.created_by,
dict(expressions=[
obj.get_latest_version().version_url
for obj in [concept1, concept2, mapping2]
]), collection, None, True)
self.assertEqual(errors, {})
self.assertEqual(len(added_references), 4)
self.assertListEqual(
sorted([ref.expression for ref in added_references]),
sorted([
concept1.get_latest_version().version_url,
concept2.get_latest_version().version_url,
mapping1.get_latest_version().version_url,
mapping2.get_latest_version().version_url,
]))
def test_delete_references(self):
collection = OrganizationCollectionFactory()
source = OrganizationSourceFactory()
concept1 = ConceptFactory(parent=source)
concept2 = ConceptFactory(parent=source)
mapping = MappingFactory(from_concept=concept1,
to_concept=concept2,
parent=source)
collection.add_references([concept1.uri, concept2.uri, mapping.uri])
self.assertEqual(collection.concepts.count(), 2)
self.assertEqual(collection.mappings.count(), 1)
self.assertEqual(collection.references.count(), 3)
collection.delete_references([
concept2.get_latest_version().uri,
mapping.get_latest_version().uri
])
self.assertEqual(collection.concepts.count(), 1)
self.assertEqual(collection.mappings.count(), 0)
self.assertEqual(collection.references.count(), 1)
self.assertEqual(collection.concepts.first().uri,
concept1.get_latest_version().uri)
self.assertEqual(collection.references.first().expression,
concept1.get_latest_version().uri)
def test_seed_children_task(self):
collection = OrganizationCollectionFactory()
concept = ConceptFactory()
mapping = MappingFactory()
concept_latest_version = concept.get_latest_version()
mapping_latest_version = mapping.get_latest_version()
collection.add_references([
concept_latest_version.version_url,
mapping_latest_version.version_url
])
self.assertEqual(collection.references.count(), 2)
self.assertEqual(collection.concepts.count(), 1)
self.assertEqual(collection.mappings.count(), 1)
collection_v1 = OrganizationCollectionFactory(
organization=collection.organization,
version='v1',
mnemonic=collection.mnemonic)
self.assertEqual(collection_v1.references.count(), 0)
self.assertEqual(collection_v1.concepts.count(), 0)
self.assertEqual(collection_v1.mappings.count(), 0)
seed_children('collection', collection_v1.id) # pylint: disable=no-value-for-parameter
self.assertEqual(collection_v1.references.count(), 2)
self.assertEqual(collection_v1.concepts.count(), 1)
self.assertEqual(collection_v1.mappings.count(), 1)
self.assertEqual(
list(collection_v1.references.values_list('expression',
flat=True)),
list(collection.references.values_list('expression', flat=True)),
)
def test_export_collection(self, s3_mock): # pylint: disable=too-many-locals
s3_mock.url_for = Mock(return_value='https://s3-url')
s3_mock.upload_file = Mock()
source = OrganizationSourceFactory()
concept1 = ConceptFactory(parent=source)
concept2 = ConceptFactory(parent=source)
mapping = MappingFactory(from_concept=concept2,
to_concept=concept1,
parent=source)
collection = OrganizationCollectionFactory()
collection.add_references([concept1.uri, concept2.uri, mapping.uri])
collection.refresh_from_db()
export_collection(collection.id) # pylint: disable=no-value-for-parameter
latest_temp_dir = get_latest_dir_in_path('/tmp/')
zipped_file = zipfile.ZipFile(latest_temp_dir + '/export.zip')
exported_data = json.loads(
zipped_file.read('export.json').decode('utf-8'))
self.assertEqual(
exported_data, {
**CollectionDetailSerializer(collection).data, 'concepts': ANY,
'mappings': ANY
})
exported_concepts = exported_data['concepts']
expected_concepts = ConceptVersionDetailSerializer(
[concept2.get_latest_version(),
concept1.get_latest_version()],
many=True).data
self.assertEqual(len(exported_concepts), 2)
self.assertIn(expected_concepts[0], exported_concepts)
self.assertIn(expected_concepts[1], exported_concepts)
exported_mappings = exported_data['mappings']
expected_mappings = MappingDetailSerializer(
[mapping.get_latest_version()], many=True).data
self.assertEqual(len(exported_mappings), 1)
self.assertEqual(expected_mappings, exported_mappings)
s3_upload_key = collection.export_path
s3_mock.upload_file.assert_called_once_with(key=s3_upload_key,
file_path=latest_temp_dir +
'/export.zip',
binary=True)
s3_mock.url_for.assert_called_once_with(s3_upload_key)
import shutil
shutil.rmtree(latest_temp_dir)
class MappingVersionsViewTest(OCLAPITestCase):
def setUp(self):
super().setUp()
self.user = UserProfileFactory()
self.token = self.user.get_token()
self.source = UserSourceFactory(user=self.user)
self.mapping = MappingFactory(parent=self.source)
def test_get_200(self):
latest_version = self.mapping.get_latest_version()
response = self.client.get(self.mapping.url + 'versions/')
self.assertEqual(response.status_code, 200)
self.assertEqual(len(response.data), 1)
self.assertTrue(response.data[0]['is_latest_version'])
self.assertEqual(response.data[0]['version_url'], latest_version.uri)
self.assertEqual(response.data[0]['versioned_object_id'], self.mapping.id)
class MappingVersionRetrieveViewTest(OCLAPITestCase):
def setUp(self):
super().setUp()
self.user = UserProfileFactory()
self.token = self.user.get_token()
self.source = UserSourceFactory(user=self.user)
self.mapping = MappingFactory(parent=self.source)
def test_get_200(self):
latest_version = self.mapping.get_latest_version()
response = self.client.get(self.mapping.url + '{}/'.format(latest_version.id))
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data['is_latest_version'], True)
self.assertEqual(response.data['version_url'], latest_version.uri)
self.assertEqual(response.data['versioned_object_id'], self.mapping.id)
def test_get_404(self):
response = self.client.get(self.mapping.url + '123/')
self.assertEqual(response.status_code, 404)
class MappingExtraRetrieveUpdateDestroyViewTest(OCLAPITestCase):
def setUp(self):
super().setUp()
self.extras = dict(foo='bar', tao='ching')
self.mapping = MappingFactory(extras=self.extras)
self.user = UserProfileFactory(organizations=[self.mapping.parent.organization])
self.token = self.user.get_token()
def test_get_200(self):
response = self.client.get(self.mapping.uri + 'extras/foo/', format='json')
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data, dict(foo='bar'))
def test_get_404(self):
response = self.client.get(self.mapping.uri + 'extras/bar/', format='json')
self.assertEqual(response.status_code, 404)
def test_put_200(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().extras, self.extras)
self.assertEqual(self.mapping.extras, self.extras)
response = self.client.put(
self.mapping.uri + 'extras/foo/',
dict(foo='foobar'),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json'
)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data, dict(foo='foobar'))
self.assertEqual(self.mapping.versions.count(), 2)
self.assertEqual(self.mapping.get_latest_version().extras, dict(foo='foobar', tao='ching'))
self.mapping.refresh_from_db()
self.assertEqual(self.mapping.extras, dict(foo='foobar', tao='ching'))
def test_put_400(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().extras, self.extras)
self.assertEqual(self.mapping.extras, self.extras)
response = self.client.put(
self.mapping.uri + 'extras/foo/',
dict(tao='foobar'),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json'
)
self.assertEqual(response.status_code, 400)
self.assertEqual(response.data, ['Must specify foo param in body.'])
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().extras, self.extras)
self.mapping.refresh_from_db()
self.assertEqual(self.mapping.extras, self.extras)
def test_delete_204(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().extras, self.extras)
self.assertEqual(self.mapping.extras, self.extras)
response = self.client.delete(
self.mapping.uri + 'extras/foo/',
HTTP_AUTHORIZATION='Token ' + self.token,
format='json'
)
self.assertEqual(response.status_code, 204)
self.assertEqual(self.mapping.versions.count(), 2)
self.assertEqual(self.mapping.get_latest_version().extras, dict(tao='ching'))
self.assertEqual(self.mapping.versions.first().extras, dict(foo='bar', tao='ching'))
self.mapping.refresh_from_db()
self.assertEqual(self.mapping.extras, dict(tao='ching'))
class MappingRetrieveUpdateDestroyViewTest(OCLAPITestCase):
def setUp(self):
super().setUp()
self.user = UserProfileFactory()
self.token = self.user.get_token()
self.source = UserSourceFactory(user=self.user)
self.mapping = MappingFactory(parent=self.source)
def test_get_200(self):
response = self.client.get(self.mapping.uri, format='json')
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data['uuid'], str(self.mapping.get_latest_version().id))
def test_get_404(self):
response = self.client.get(
self.source.mappings_url + '123/', format='json'
)
self.assertEqual(response.status_code, 404)
def test_put_200(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().map_type, SAME_AS)
response = self.client.put(
self.mapping.uri,
dict(map_type='narrower than'),
HTTP_AUTHORIZATION='Token ' + self.token,
)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data['uuid'], str(self.mapping.get_latest_version().id))
self.assertEqual(response.data['map_type'], 'narrower than')
self.assertEqual(self.mapping.versions.count(), 2)
self.assertEqual(self.mapping.get_latest_version().map_type, 'narrower than')
self.mapping.refresh_from_db()
self.assertEqual(self.mapping.map_type, 'narrower than')
def test_put_400(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertEqual(self.mapping.get_latest_version().map_type, SAME_AS)
response = self.client.put(
self.mapping.uri,
dict(map_type=''),
HTTP_AUTHORIZATION='Token ' + self.token,
)
self.assertEqual(response.status_code, 400)
self.assertEqual(
response.data, dict(map_type=[ErrorDetail(string='This field may not be blank.', code='blank')])
)
self.assertEqual(self.mapping.versions.count(), 1)
def test_delete_204(self):
self.assertEqual(self.mapping.versions.count(), 1)
self.assertFalse(self.mapping.get_latest_version().retired)
response = self.client.delete(
self.mapping.uri,
HTTP_AUTHORIZATION='Token ' + self.token,
)
self.assertEqual(response.status_code, 204)
self.assertEqual(self.mapping.versions.count(), 2)
self.assertFalse(self.mapping.versions.first().retired)
latest_version = self.mapping.get_latest_version()
self.assertTrue(latest_version.retired)
self.assertEqual(latest_version.comment, 'Mapping was retired')
self.mapping.refresh_from_db()
self.assertTrue(self.mapping.retired)
def test_put_200_specific_expression(self):
response = self.client.put(
'/collections/coll/references/',
dict(data=dict(concepts=[self.concept.uri])),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json')
self.assertEqual(response.status_code, 200)
self.assertEqual(response.data, [
dict(
added=False,
expression=self.concept.uri,
message=[
'Concept or Mapping reference name must be unique in a collection.'
])
])
concept2 = ConceptFactory()
response = self.client.put('/collections/coll/references/',
dict(data=dict(concepts=[concept2.uri])),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json')
self.assertEqual(response.status_code, 200)
self.collection.refresh_from_db()
self.assertEqual(self.collection.references.count(), 2)
self.assertEqual(self.collection.concepts.count(), 2)
self.assertEqual(self.collection.active_concepts, 2)
self.assertEqual(self.collection.active_mappings, 0)
self.assertTrue(
self.collection.references.filter(
expression=concept2.get_latest_version().uri).exists())
self.assertEqual(response.data, [
dict(
added=True,
expression=concept2.get_latest_version().uri,
message=
'Added the latest versions of concept to the collection. Future updates will not be added'
' automatically.')
])
mapping = MappingFactory(from_concept=concept2,
to_concept=self.concept,
parent=self.concept.parent)
response = self.client.put('/collections/coll/references/',
dict(data=dict(mappings=[mapping.uri])),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json')
self.assertEqual(response.status_code, 200)
self.collection.refresh_from_db()
self.assertEqual(self.collection.references.count(), 3)
self.assertEqual(self.collection.concepts.count(), 2)
self.assertEqual(self.collection.mappings.count(), 1)
self.assertEqual(self.collection.active_concepts, 2)
self.assertEqual(self.collection.active_mappings, 1)
self.assertTrue(
self.collection.references.filter(
expression=mapping.get_latest_version().uri).exists())
self.assertEqual(response.data, [
dict(
added=True,
expression=mapping.get_latest_version().uri,
message=
'Added the latest versions of mapping to the collection. Future updates will not be added'
' automatically.')
])
concept3 = ConceptFactory()
latest_version = concept3.get_latest_version()
mapping2 = MappingFactory(from_concept=latest_version,
parent=concept3.parent)
response = self.client.put(
'/collections/coll/references/?cascade=sourcemappings',
dict(data=dict(concepts=[latest_version.uri])),
HTTP_AUTHORIZATION='Token ' + self.token,
format='json')
self.assertEqual(response.status_code, 200)
self.collection.refresh_from_db()
self.assertEqual(self.collection.references.count(), 5)
self.assertEqual(self.collection.concepts.count(), 3)
self.assertEqual(self.collection.mappings.count(), 2)
self.assertEqual(self.collection.active_concepts, 3)
self.assertEqual(self.collection.active_mappings, 2)
self.assertTrue(
self.collection.references.filter(
expression=mapping2.get_latest_version().uri).exists())
self.assertTrue(
self.collection.references.filter(
expression=latest_version.uri).exists())
