def analysis_status(request, uuid):
"""Returns analysis status in HTML or JSON formats (for AJAX requests)"""
# TODO: handle MultipleObjectsReturned exception
try:
analysis = Analysis.objects.get(uuid=uuid)
except Analysis.DoesNotExist:
logger.error("Analysis with UUID '%s' does not exist", uuid)
return HttpResponse(custom_error_page(request, '404.html', {}),
status='404')
# TODO: handle MultipleObjectsReturned exception
try:
status = AnalysisStatus.objects.get(analysis=analysis)
except AnalysisStatus.DoesNotExist:
logger.error("AnalysisStatus object does not exist for Analysis '%s'",
analysis.name)
return HttpResponse(custom_error_page(request, '500.html', {}),
status='500')
# add analysis status message if request came from this view
referer_path = urlparse(request.META.get('HTTP_REFERER', '')).path
if referer_path == request.path:
# clear messages to avoid message duplication
storage = messages.get_messages(request)
storage.used = True
# add analysis status message
if analysis.get_status() == Analysis.FAILURE_STATUS:
msg = "Analysis '{}' failed. No results were added to your data " \
"set.".format(analysis.name)
messages.error(request, msg)
elif analysis.get_status() == Analysis.SUCCESS_STATUS:
msg = "Analysis '{}' finished successfully. View the results in " \
"the file browser.".format(analysis.name)
messages.success(request, msg)
if request.is_ajax():
ret_json = {
'refineryImport': status.refinery_import_state(),
'galaxyAnalysis': status.galaxy_analysis_state(),
'galaxyExport': status.galaxy_export_state(),
'overall': analysis.get_status(),
}
if analysis.is_tool_based:
ret_json['galaxyImport'] = (
status.tool_based_galaxy_file_import_state())
else:
ret_json['galaxyImport'] = status.galaxy_file_import_state()
logger.debug("Analysis status for '%s': %s", analysis.name,
json.dumps(ret_json))
return HttpResponse(json.dumps(ret_json, indent=4),
content_type='application/javascript')
return render_to_response('analysis_manager/analysis_status.html', {
'uuid': uuid,
'status': status,
'analysis': analysis
},
context_instance=RequestContext(request))
def analysis_status(request, uuid):
logger.debug("analysis_manager.views.analysis_status called")
#TODO: handle MultipleObjectsReturned exception
try:
analysis = Analysis.objects.get(uuid=uuid)
except Analysis.DoesNotExist:
logger.error("Analysis with UUID '{}' does not exist".format(uuid))
return HttpResponse(custom_error_page(request, '404.html', {}),
status='404')
#TODO: handle MultipleObjectsReturned exception
try:
status = AnalysisStatus.objects.get(analysis=analysis)
except AnalysisStatus.DoesNotExist:
logger.error(
"AnalysisStatus object does not exist for Analysis '{}'".format(
analysis.name))
return HttpResponse(custom_error_page(request, '500.html', {}),
status='500')
# add analysis status message if request came from this view
referer_path = urlparse(request.META.get('HTTP_REFERER', '')).path
if referer_path == request.path:
# clear messages to avoid message duplication
storage = messages.get_messages(request)
storage.used = True
# add analysis status message
if analysis.get_status() == Analysis.FAILURE_STATUS:
msg = "Analysis '{}' failed. No results were added to your data set."\
.format(analysis.name)
messages.error(request, msg)
elif analysis.get_status() == Analysis.SUCCESS_STATUS:
msg = "Analysis '{}' finished successfully. View the results in the file browser."\
.format(analysis.name)
messages.success(request, msg)
if request.is_ajax():
ret_json = {}
if status:
ret_json['preprocessing'] = status.preprocessing_status()
ret_json['execution'] = status.execution_status()
ret_json['postprocessing'] = status.postprocessing_status()
ret_json['cleanup'] = status.cleanup_status()
ret_json['overall'] = analysis.get_status()
logger.debug("Analysis: '{}'".format(analysis.name))
logger.debug(simplejson.dumps(ret_json, indent=2))
return HttpResponse(simplejson.dumps(ret_json),
mimetype='application/javascript')
else:
return render_to_response('analysis_manager/analysis_status.html', {
'uuid': uuid,
'status': status,
'analysis': analysis
},
context_instance=RequestContext(request))
def analysis_status(request, uuid):
logger.debug("analysis_manager.views.analysis_status called")
# TODO: handle MultipleObjectsReturned exception
try:
analysis = Analysis.objects.get(uuid=uuid)
except Analysis.DoesNotExist:
logger.error("Analysis with UUID '{}' does not exist".format(uuid))
return HttpResponse(custom_error_page(request, '404.html', {}),
status='404')
# TODO: handle MultipleObjectsReturned exception
try:
status = AnalysisStatus.objects.get(analysis=analysis)
except AnalysisStatus.DoesNotExist:
logger.error("AnalysisStatus object does not exist for Analysis '{}'"
.format(analysis.name))
return HttpResponse(custom_error_page(request, '500.html', {}),
status='500')
# add analysis status message if request came from this view
referer_path = urlparse(request.META.get('HTTP_REFERER', '')).path
if referer_path == request.path:
# clear messages to avoid message duplication
storage = messages.get_messages(request)
storage.used = True
# add analysis status message
if analysis.get_status() == Analysis.FAILURE_STATUS:
msg = "Analysis '{}' failed. " \
"No results were added to your data set."\
.format(analysis.name)
messages.error(request, msg)
elif analysis.get_status() == Analysis.SUCCESS_STATUS:
msg = "Analysis '{}' finished successfully. " \
"View the results in the file browser."\
.format(analysis.name)
messages.success(request, msg)
if request.is_ajax():
ret_json = {}
if status:
ret_json['preprocessing'] = status.preprocessing_status()
ret_json['execution'] = status.execution_status()
ret_json['postprocessing'] = status.postprocessing_status()
ret_json['cleanup'] = status.cleanup_status()
ret_json['overall'] = analysis.get_status()
logger.debug("Analysis: '%s'", analysis.name)
logger.debug(simplejson.dumps(ret_json))
return HttpResponse(simplejson.dumps(ret_json),
mimetype='application/javascript')
else:
return render_to_response(
'analysis_manager/analysis_status.html',
{'uuid': uuid, 'status': status, 'analysis': analysis},
context_instance=RequestContext(request))
def analysis_status(request, uuid):
"""Returns analysis status in HTML or JSON formats (for AJAX requests)"""
# TODO: handle MultipleObjectsReturned exception
try:
analysis = Analysis.objects.get(uuid=uuid)
except Analysis.DoesNotExist:
logger.error("Analysis with UUID '{}' does not exist".format(uuid))
return HttpResponse(custom_error_page(request, '404.html', {}),
status='404')
# TODO: handle MultipleObjectsReturned exception
try:
status = AnalysisStatus.objects.get(analysis=analysis)
except AnalysisStatus.DoesNotExist:
logger.error("AnalysisStatus object does not exist for Analysis '{}'"
.format(analysis.name))
return HttpResponse(custom_error_page(request, '500.html', {}),
status='500')
# add analysis status message if request came from this view
referer_path = urlparse(request.META.get('HTTP_REFERER', '')).path
if referer_path == request.path:
# clear messages to avoid message duplication
storage = messages.get_messages(request)
storage.used = True
# add analysis status message
if analysis.get_status() == Analysis.FAILURE_STATUS:
msg = "Analysis '{}' failed. No results were added to your data " \
"set.".format(analysis.name)
messages.error(request, msg)
elif analysis.get_status() == Analysis.SUCCESS_STATUS:
msg = "Analysis '{}' finished successfully. View the results in " \
"the file browser.".format(analysis.name)
messages.success(request, msg)
if request.is_ajax():
ret_json = {
'refineryImport': status.refinery_import_state(),
'galaxyImport': status.galaxy_import_state(),
'galaxyAnalysis': status.galaxy_analysis_state(),
'galaxyExport': status.galaxy_export_state(),
'overall': analysis.get_status(),
}
logger.debug("Analysis status for '%s': %s",
analysis.name, json.dumps(ret_json))
return HttpResponse(json.dumps(ret_json, indent=4),
mimetype='application/javascript')
else:
return render_to_response(
'analysis_manager/analysis_status.html',
{'uuid': uuid, 'status': status, 'analysis': analysis},
context_instance=RequestContext(request))
