def get_sigs_in_dir(directory, viname=None, searchstring='mean.ref', recursivesearch=False):
signatures = signatureCollection(viName=viname)
sigFiles = find_files(directory, searchstring, recursive=recursivesearch)
for f in sigFiles:
signatures.add(f)
return signatures
def plot_sigs(signaturedirectory, outputdirectory, name, signaturename):
"""
"""
import os
from utils import find_files, unique_name
from core import signatureCollection
from plotting import SignaturePlot
if not outputdirectory:
outputdirectory = signaturedirectory
sigs = find_files(signaturedirectory, "mean.ref")
if not sigs:
click.BadParameter("Did not find any signature files in the specified directory.")
if signaturename:
filteredsigs = []
for searchstring in signaturename:
for sig in sigs:
if searchstring.upper() in sig.upper():
filteredsigs.append(sig)
sigs = filteredsigs
signatures = signatureCollection()
for sig in sigs:
try:
signatures.add(sig)
except Exception as e:
print e
#TODO Fix core temporalSignature to use exceptions so they can be properly handled here
name, ext = os.path.splitext(name)
path = unique_name(outputdirectory, name, ext=ext)
print("Outputting to {0}".format(path))
plot = SignaturePlot(outputdirectory, os.path.basename(path))
plot.plot_collection(signatures)
]
# directory to search for sigs
signaturedirectory = "/Users/phoetrymaster/Documents/School/Geography/Thesis/Data/Pellegrini/MODIS_10-13_6-14_resampled/Summer2014/multidate_image_aqua105/interpolatedband10/signatures_2014-08-24_0935/"
# dir for output
outputdir = "/Users/phoetrymaster/Documents/School/Geography/Thesis/ThesisTeX/plots/"
#outputdir = "/Users/phoetrymaster/Documents/TeX/deletetest/plots"
# plot name
name = "othersigsAR.pgf"
# find sigs in directory and add to sig collection
sigs = find_files(signaturedirectory, "mean.ref")
signatures = signatureCollection()
for sig in sigs:
try:
signatures.add(sig)
except Exception as e:
print e
# fonts and other formatting settings
pgf_with_rc_fonts = {"pgf.texsystem": "/usr/texbin/xelatex",
'text.color': 'black',
"font.family": "serif",
"font.serif": ["/Library/Fonts/Baskerville.ttc"],
"font.sans-serif": ["Myriad Pro"],
'font.size': 10,
signaturedirectory = "/Users/phoetrymaster/Documents/School/Geography/Thesis/Data/MODIS_KANSAS_2007-2012/reprojected/Refs/2012clip1test2/clip1/"
oldsigdir = "/Users/phoetrymaster/Documents/School/Geography/Thesis/Data/MODIS_KANSAS_2007-2012/reprojected/Refs/2012/clip1/corn_NDVI_mean.ref"
# dir for output
outputdir = "/Users/phoetrymaster/Documents/School/Geography/Thesis/ThesisTeX/plots/"
#outputdir = "/Users/phoetrymaster/Documents/TeX/deletetest/plots"
# plot name
name = "refinedsorghumKS.pgf"
# find sigs in directory and add to sig collection
meansigs = find_files(signaturedirectory, "mean.ref")
meansignatures = signatureCollection()
for sig in meansigs:
try:
meansignatures.add(sig)
except Exception as e:
print e
pointsigs = find_files(signaturedirectory, "points.ref")
pointsignatures = signatureCollection()
for sig in pointsigs:
signame = os.path.splitext(os.path.basename(sig))[0]
values = parse_points_ref(sig)