def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("onnx") is None:
raise CortexException(api["name"], "onnx key not configured")
_, prefix = ctx.storage.deconstruct_s3_path(api["onnx"]["model"])
model_path = os.path.join(args.model_dir, os.path.basename(prefix))
if api["onnx"].get("request_handler") is not None:
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"], args.project_dir)
request_handler = local_cache.get("request_handler")
if request_handler is not None and util.has_function(
request_handler, "pre_inference"):
cx_logger().info(
"using pre_inference request handler provided in {}".format(
api["onnx"]["request_handler"]))
else:
cx_logger().info("pre_inference request handler not found")
if request_handler is not None and util.has_function(
request_handler, "post_inference"):
cx_logger().info(
"using post_inference request handler provided in {}".format(
api["onnx"]["request_handler"]))
else:
cx_logger().info("post_inference request handler not found")
sess = rt.InferenceSession(model_path)
local_cache["sess"] = sess
local_cache["input_metadata"] = sess.get_inputs()
cx_logger().info("input_metadata: {}".format(
truncate(extract_signature(local_cache["input_metadata"]))))
local_cache["output_metadata"] = sess.get_outputs()
cx_logger().info("output_metadata: {}".format(
truncate(extract_signature(local_cache["output_metadata"]))))
except Exception as e:
cx_logger().exception("failed to start api")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get(
"model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
cx_logger().warn(
"an error occurred while attempting to load classes",
exc_info=True)
cx_logger().info("API is ready")
serve(app, listen="*:{}".format(args.port))
def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("request_handler_impl_key") is not None:
package.install_packages(ctx.python_packages, ctx.storage)
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"])
model_cache_path = os.path.join(args.model_dir, args.api)
if not os.path.exists(model_cache_path):
ctx.storage.download_file_external(api["model"], model_cache_path)
sess = rt.InferenceSession(model_cache_path)
local_cache["sess"] = sess
local_cache["input_metadata"] = sess.get_inputs()
local_cache["output_metadata"] = sess.get_outputs()
except CortexException as e:
e.wrap("error")
logger.error(str(e))
if api is not None:
logger.exception(
"An error occured starting the api, see `cx logs -v api {}` for more details"
.format(api["name"]))
sys.exit(1)
serve(app, listen="*:{}".format(args.port))
def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("request_handler") is not None:
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"], args.project_dir)
except Exception as e:
logger.exception("failed to start api")
sys.exit(1)
try:
validate_model_dir(args.model_dir)
except Exception as e:
logger.exception("failed to validate model")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get(
"model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
logger.warn("an error occurred while attempting to load classes",
exc_info=True)
channel = grpc.insecure_channel("localhost:" + str(args.tf_serve_port))
local_cache["stub"] = prediction_service_pb2_grpc.PredictionServiceStub(
channel)
# wait a bit for tf serving to start before querying metadata
limit = 60
for i in range(limit):
try:
local_cache["metadata"] = run_get_model_metadata()
break
except Exception as e:
if i > 6:
logger.warn(
"unable to read model metadata - model is still loading. Retrying..."
)
if i == limit - 1:
logger.exception("retry limit exceeded")
sys.exit(1)
time.sleep(5)
logger.info("model_signature: {}".format(
extract_signature(
local_cache["metadata"]["signatureDef"],
local_cache["api"]["tf_serving"]["signature_key"],
)))
serve(app, listen="*:{}".format(args.port))
def start(args):
api = None
try:
ctx = Context(s3_path=args.context, cache_dir=args.cache_dir, workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api["predictor"]["type"] != "onnx":
raise CortexException(api["name"], "predictor type is not onnx")
cx_logger().info("loading the predictor from {}".format(api["predictor"]["path"]))
_, prefix = ctx.storage.deconstruct_s3_path(api["predictor"]["model"])
model_path = os.path.join(args.model_dir, os.path.basename(prefix))
local_cache["client"] = ONNXClient(model_path)
predictor_class = ctx.get_predictor_class(api["name"], args.project_dir)
try:
local_cache["predictor"] = predictor_class(
local_cache["client"], api["predictor"]["config"]
)
except Exception as e:
raise UserRuntimeException(api["predictor"]["path"], "__init__", str(e)) from e
finally:
refresh_logger()
except Exception as e:
cx_logger().exception("failed to start api")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get("model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
cx_logger().warn("an error occurred while attempting to load classes", exc_info=True)
cx_logger().info("ONNX model signature: {}".format(local_cache["client"].input_signature))
waitress_kwargs = {}
if api["predictor"].get("config") is not None:
for key, value in api["predictor"]["config"].items():
if key.startswith("waitress_"):
waitress_kwargs[key[len("waitress_") :]] = value
if len(waitress_kwargs) > 0:
cx_logger().info("waitress parameters: {}".format(waitress_kwargs))
waitress_kwargs["listen"] = "*:{}".format(args.port)
cx_logger().info("{} api is live".format(api["name"]))
open("/health_check.txt", "a").close()
serve(app, **waitress_kwargs)
def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("predictor") is None:
raise CortexException(api["name"], "predictor key not configured")
cx_logger().info("loading the predictor from {}".format(
api["predictor"]["path"]))
local_cache["predictor"] = ctx.get_predictor_impl(
api["name"], args.project_dir)
if util.has_function(local_cache["predictor"], "init"):
try:
model_path = None
if api["predictor"].get("model") is not None:
_, prefix = ctx.storage.deconstruct_s3_path(
api["predictor"]["model"])
model_path = os.path.join(
args.model_dir,
os.path.basename(os.path.normpath(prefix)))
cx_logger().info("calling the predictor's init() function")
local_cache["predictor"].init(model_path,
api["predictor"]["metadata"])
except Exception as e:
raise UserRuntimeException(api["predictor"]["path"], "init",
str(e)) from e
finally:
refresh_logger()
except:
cx_logger().exception("failed to start api")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get(
"model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
cx_logger().warn(
"an error occurred while attempting to load classes",
exc_info=True)
cx_logger().info("{} api is live".format(api["name"]))
serve(app, listen="*:{}".format(args.port))
def main():
parser = argparse.ArgumentParser()
na = parser.add_argument_group("required named arguments")
na.add_argument("--workload-id", required=True, help="Workload ID")
na.add_argument(
"--context",
required=True,
help="S3 path to context (e.g. s3://bucket/path/to/context.json")
na.add_argument("--cache-dir",
required=True,
help="Local path for the context cache")
na.add_argument("--python-packages",
help="Resource ids of packages to build")
na.add_argument("--build",
action="store_true",
help="Flag to determine mode (build vs install)")
args, _ = parser.parse_known_args()
if args.build:
build(args)
else:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
install_packages(ctx.python_packages, ctx.storage)
def run_job(args):
should_ingest, cols_to_validate, cols_to_aggregate, cols_to_transform, training_datasets = parse_args(
args)
resource_id_list = cols_to_validate + cols_to_aggregate + cols_to_transform + training_datasets
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
except Exception as e:
logger.exception("An error occurred, see the logs for more details.")
sys.exit(1)
try:
spark = None # For the finally clause
spark = get_spark_session(ctx.workload_id)
spark.sparkContext.parallelize(
[1, 2, 3, 4, 5]).count() # test that executors are allocated
raw_df = ingest_raw_dataset(spark, ctx, cols_to_validate,
should_ingest)
if len(cols_to_aggregate) > 0:
run_aggregators(spark, ctx, cols_to_aggregate, raw_df)
if len(cols_to_transform) > 0:
validate_transformers(spark, ctx, cols_to_transform, raw_df)
create_training_datasets(spark, ctx, training_datasets, raw_df)
util.log_job_finished(ctx.workload_id)
except CortexException as e:
e.wrap("error")
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v {} {}` for more details.".
format(
ctx.id_map[resource_id_list[0]]["resource_type"],
ctx.id_map[resource_id_list[0]]["name"],
))
sys.exit(1)
except Exception as e:
logger.exception(
"An error occurred, see `cortex logs -v {} {}` for more details.".
format(
ctx.id_map[resource_id_list[0]]["resource_type"],
ctx.id_map[resource_id_list[0]]["name"],
))
sys.exit(1)
finally:
if spark is not None:
spark.stop()
def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
_, prefix = ctx.storage.deconstruct_s3_path(api["model"])
model_path = os.path.join(args.model_dir, os.path.basename(prefix))
if api.get("request_handler") is not None:
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"], args.project_dir)
sess = rt.InferenceSession(model_path)
local_cache["sess"] = sess
local_cache["input_metadata"] = sess.get_inputs()
logger.info("input_metadata: {}".format(
truncate(extract_signature(local_cache["input_metadata"]))))
local_cache["output_metadata"] = sess.get_outputs()
logger.info("output_metadata: {}".format(
truncate(extract_signature(local_cache["output_metadata"]))))
except Exception as e:
logger.exception("failed to start api")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get(
"model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
logger.warn("an error occurred while attempting to load classes",
exc_info=True)
serve(app, listen="*:{}".format(args.port))
def build(args):
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
python_packages_list = [
ctx.pp_id_map[id] for id in args.python_packages.split(",")
]
python_packages = {
python_package["name"]: python_package
for python_package in python_packages_list
}
ctx.upload_resource_status_start(*python_packages_list)
try:
build_packages(python_packages, ctx.storage)
util.log_job_finished(ctx.workload_id)
except CortexException as e:
e.wrap("error")
logger.exception(e)
ctx.upload_resource_status_failed(*python_packages_list)
except Exception as e:
logger.exception(e)
ctx.upload_resource_status_failed(*python_packages_list)
else:
ctx.upload_resource_status_success(*python_packages_list)
def start(args):
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("request_handler_impl_key") is not None:
package.install_packages(ctx.python_packages, ctx.storage)
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"])
model_cache_path = os.path.join(args.model_dir, args.api)
if not os.path.exists(model_cache_path):
ctx.storage.download_file_external(api["model"], model_cache_path)
sess = rt.InferenceSession(model_cache_path)
local_cache["sess"] = sess
local_cache["input_metadata"] = sess.get_inputs()
local_cache["output_metadata"] = sess.get_outputs()
logger.info("Serving model: {}".format(
util.remove_resource_ref(api["model"])))
serve(app, listen="*:{}".format(args.port))
def start(args):
api = None
try:
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
if api.get("tensorflow") is None:
raise CortexException(api["name"], "tensorflow key not configured")
if api["tensorflow"].get("request_handler") is not None:
cx_logger().info("loading the request handler from {}".format(
api["tensorflow"]["request_handler"]))
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"], args.project_dir)
request_handler = local_cache.get("request_handler")
if request_handler is not None and util.has_function(
request_handler, "pre_inference"):
cx_logger().info(
"using pre_inference request handler defined in {}".format(
api["tensorflow"]["request_handler"]))
else:
cx_logger().info("pre_inference request handler not defined")
if request_handler is not None and util.has_function(
request_handler, "post_inference"):
cx_logger().info(
"using post_inference request handler defined in {}".format(
api["tensorflow"]["request_handler"]))
else:
cx_logger().info("post_inference request handler not defined")
except Exception as e:
cx_logger().exception("failed to start api")
sys.exit(1)
try:
validate_model_dir(args.model_dir)
except Exception as e:
cx_logger().exception("failed to validate model")
sys.exit(1)
if api.get("tracker") is not None and api["tracker"].get(
"model_type") == "classification":
try:
local_cache["class_set"] = api_utils.get_classes(ctx, api["name"])
except Exception as e:
cx_logger().warn(
"an error occurred while attempting to load classes",
exc_info=True)
channel = grpc.insecure_channel("localhost:" + str(args.tf_serve_port))
local_cache["stub"] = prediction_service_pb2_grpc.PredictionServiceStub(
channel)
# wait a bit for tf serving to start before querying metadata
limit = 60
for i in range(limit):
try:
local_cache["model_metadata"] = run_get_model_metadata()
break
except Exception as e:
if i > 6:
cx_logger().warn(
"unable to read model metadata - model is still loading. Retrying..."
)
if i == limit - 1:
cx_logger().exception("retry limit exceeded")
sys.exit(1)
time.sleep(5)
signature_key, parsed_signature = extract_signature(
local_cache["model_metadata"]["signatureDef"],
api["tensorflow"]["signature_key"])
local_cache["signature_key"] = signature_key
local_cache["parsed_signature"] = parsed_signature
cx_logger().info("model_signature: {}".format(
local_cache["parsed_signature"]))
cx_logger().info("{} API is live".format(api["name"]))
serve(app, listen="*:{}".format(args.port))
def train(args):
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
package.install_packages(ctx.python_packages, ctx.storage)
model = ctx.models_id_map[args.model]
logger.info("Training")
with util.Tempdir(ctx.cache_dir) as temp_dir:
model_dir = os.path.join(temp_dir, "model_dir")
ctx.upload_resource_status_start(model)
try:
estimator_impl, _ = ctx.get_estimator_impl(model["name"])
train_util.train(model["name"], estimator_impl, ctx, model_dir)
ctx.upload_resource_status_success(model)
logger.info("Caching")
logger.info("Caching model " + model["name"])
model_export_dir = os.path.join(model_dir, "export", "estimator")
model_zip_path = os.path.join(temp_dir, "model.zip")
util.zip_dir(model_export_dir, model_zip_path)
ctx.storage.upload_file(model_zip_path, model["key"])
util.log_job_finished(ctx.workload_id)
except CortexException as e:
ctx.upload_resource_status_failed(model)
e.wrap("error")
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v model {}` for more details."
.format(model["name"]))
sys.exit(1)
except Exception as e:
ctx.upload_resource_status_failed(model)
logger.exception(
"An error occurred, see `cortex logs -v model {}` for more details."
.format(model["name"]))
sys.exit(1)
def start(args):
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
try:
if api.get("request_handler_impl_key") is not None:
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"])
if not util.is_resource_ref(api["model"]):
if api.get("request_handler") is not None:
package.install_packages(ctx.python_packages, ctx.storage)
if not os.path.isdir(args.model_dir):
ctx.storage.download_and_unzip_external(
api["model"], args.model_dir)
else:
package.install_packages(ctx.python_packages, ctx.storage)
model_name = util.get_resource_ref(api["model"])
model = ctx.models[model_name]
estimator = ctx.estimators[model["estimator"]]
local_cache["model"] = model
local_cache["estimator"] = estimator
local_cache["target_col"] = ctx.columns[util.get_resource_ref(
model["target_column"])]
local_cache["target_col_type"] = ctx.get_inferred_column_type(
util.get_resource_ref(model["target_column"]))
log_level = "DEBUG"
if ctx.environment is not None and ctx.environment.get(
"log_level") is not None:
log_level = ctx.environment["log_level"].get(
"tensorflow", "DEBUG")
tf_lib.set_logging_verbosity(log_level)
if not os.path.isdir(args.model_dir):
ctx.storage.download_and_unzip(model["key"], args.model_dir)
for column_name in ctx.extract_column_names(
[model["input"], model["target_column"]]):
if ctx.is_transformed_column(column_name):
trans_impl, _ = ctx.get_transformer_impl(column_name)
local_cache["trans_impls"][column_name] = trans_impl
transformed_column = ctx.transformed_columns[column_name]
# cache aggregate values
for resource_name in util.extract_resource_refs(
transformed_column["input"]):
if resource_name in ctx.aggregates:
ctx.get_obj(ctx.aggregates[resource_name]["key"])
local_cache["required_inputs"] = tf_lib.get_base_input_columns(
model["name"], ctx)
if util.is_dict(model["input"]) and model["input"].get(
"target_vocab") is not None:
local_cache["target_vocab_populated"] = ctx.populate_values(
model["input"]["target_vocab"], None, False)
except CortexException as e:
e.wrap("error")
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details.".
format(api["name"]))
sys.exit(1)
except Exception as e:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details.".
format(api["name"]))
sys.exit(1)
try:
validate_model_dir(args.model_dir)
except Exception as e:
logger.exception(e)
sys.exit(1)
channel = grpc.insecure_channel("localhost:" + str(args.tf_serve_port))
local_cache["stub"] = prediction_service_pb2_grpc.PredictionServiceStub(
channel)
# wait a bit for tf serving to start before querying metadata
limit = 300
for i in range(limit):
try:
local_cache["metadata"] = run_get_model_metadata()
break
except Exception as e:
if i == limit - 1:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
sys.exit(1)
time.sleep(1)
serve(app, listen="*:{}".format(args.port))
def _get_context(d):
return Context(obj=d, cache_dir=".")
def test_simple_end_to_end(spark):
local_storage_path = Path("/workspace/local_storage")
local_storage_path.mkdir(parents=True, exist_ok=True)
should_ingest = True
input_data_path = os.path.join(str(local_storage_path), "insurance.csv")
raw_ctx = insurance_context.get(input_data_path)
workload_id = raw_ctx["raw_columns"]["raw_string_columns"]["smoker"][
"workload_id"]
cols_to_validate = []
for column_type in raw_ctx["raw_columns"].values():
for raw_column in column_type.values():
cols_to_validate.append(raw_column["id"])
insurance_data_string = "\n".join(",".join(str(val) for val in line)
for line in insurance_data)
Path(os.path.join(str(local_storage_path),
"insurance.csv")).write_text(insurance_data_string)
ctx = Context(raw_obj=raw_ctx,
cache_dir="/workspace/cache",
local_storage_path=str(local_storage_path))
storage = ctx.storage
raw_df = spark_job.ingest_raw_dataset(spark, ctx, cols_to_validate,
should_ingest)
assert raw_df.count() == 15
assert ctx.get_metadata(ctx.raw_dataset["key"])["dataset_size"] == 15
for raw_column_id in cols_to_validate:
path = os.path.join(raw_ctx["status_prefix"], raw_column_id,
workload_id)
status = storage.get_json(str(path))
status["resource_id"] = raw_column_id
status["exist_code"] = "succeeded"
cols_to_aggregate = [r["id"] for r in raw_ctx["aggregates"].values()]
spark_job.run_aggregators(spark, ctx, cols_to_aggregate, raw_df)
for aggregate_id in cols_to_aggregate:
for aggregate_resource in raw_ctx["aggregates"].values():
if aggregate_resource["id"] == aggregate_id:
assert local_storage_path.joinpath(
aggregate_resource["key"]).exists()
path = os.path.join(raw_ctx["status_prefix"], aggregate_id,
workload_id)
status = storage.get_json(str(path))
status["resource_id"] = aggregate_id
status["exist_code"] = "succeeded"
cols_to_transform = [
r["id"] for r in raw_ctx["transformed_columns"].values()
]
spark_job.validate_transformers(spark, ctx, cols_to_transform, raw_df)
for transformed_id in cols_to_transform:
path = os.path.join(raw_ctx["status_prefix"], transformed_id,
workload_id)
status = storage.get_json(str(path))
status["resource_id"] = transformed_id
status["exist_code"] = "succeeded"
training_datasets = [raw_ctx["models"]["dnn"]["dataset"]["id"]]
spark_job.create_training_datasets(spark, ctx, training_datasets, raw_df)
for dataset_id in training_datasets:
path = os.path.join(raw_ctx["status_prefix"], transformed_id,
workload_id)
status = storage.get_json(str(path))
status["resource_id"] = transformed_id
status["exist_code"] = "succeeded"
dataset = raw_ctx["models"]["dnn"]["dataset"]
metadata = ctx.get_metadata(dataset["id"])
assert metadata["training_size"] + metadata["eval_size"] == 15
assert local_storage_path.joinpath(dataset["train_key"],
"_SUCCESS").exists()
assert local_storage_path.joinpath(dataset["eval_key"],
"_SUCCESS").exists()
