# For analytic test, assume the user has specified what fields to analyse
# in the XML (In the background this will generate the flattened XML
# for the model
fTests = mRun.analysis['fieldTests']
fTests.readFromStgXML(mRun.modelInputFiles)
# Set all field tolerances at once. Of course, should allow this to
# be over-ridden
fTests.setAllTols(defaultFieldTol)
mRun.writeModelRunXML()
# This will generate an additional XML to require StGermain/Underworld
# to do any requested extra analysis (eg compare fields), and run
# for the appropriate number of timesteps etc.
mRun.analysisXML = mrun.analysisXMLGen(mRun)
credo.prepareOutputLogDirs(mRun.outputPath, mRun.logPath)
# This will run the model, and also save basic results (e.g. walltime)
results = mrun.runModel(mRun, customOpts)
# TODO: First step necessary since currently convergence files saved
# in directory of run, may be better handled within the runModel
credo.moveConvergenceResults(os.getcwd(), mRun.outputPath)
results.fieldResults = fTests.testConvergence(mRun.outputPath)
mres.writeModelResultsXML(results, path=mRun.outputPath)
#Now do any required post-processing, depending on type of script
credo.cleanupOutputLogDirs(mRun.outputPath, mRun.logPath)
fTests = mRun.analysis['fieldTests']
fTests.testTimestep = runSteps
fTests.useReference = True
fTests.referencePath = expectedPath
defFieldTol = 1e-2
for fieldName in standardFields:
fTests.add(FieldTest(fieldName, tol=defFieldTol))
mRun.writeInfoXML()
# This will generate an additional XML to require StGermain/Underworld to do
# any requested extra analysis (eg compare fields), and run for the
# appropriate number of timesteps etc.
mRun.analysisXMLGen()
credo.prepareOutputLogDirs(mRun.outputPath, mRun.logPath)
# This will run the model, and also save basic results (e.g. walltime)
results = credo.modelrun.runModel(mRun)
if not createReference:
# TODO: This step necessary since currently convergence files saved
# in directory of run may be better handled within the runModel
credo.moveConvergenceResults(os.getcwd(), mRun.outputPath)
results.fieldResults = fTests.testConvergence(outputPath)
credo.modelresult.writeModelResultsXML(results, path=mRun.outputPath)
#Now do any required post-processing, depending on type of script
credo.cleanupOutputLogDirs(mRun.outputPath, mRun.logPath)