def test_get_cnc(self):
"""Test get_cnc() function"""
with utils.temporary_working_directory() as tmpdir:
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test.pdb'),
'1abc.pdb')
res, num = bmi_feature_parser.get_cnc('1abc')
self.assertEqual(len(res), 8)
self.assertEqual(num, ('1', '1'))
def test_get_cnc(self):
"""Test get_cnc() function"""
with utils.temporary_working_directory() as tmpdir:
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test.pdb'),
'1abc.pdb')
res, num = bmi_feature_parser.get_cnc('1abc')
self.assertEqual(len(res), 8)
self.assertEqual(num, ('1', '1'))
def test_get_cnc_pockets(self):
"""Test get_cnc() parsing of pocket information"""
with utils.temporary_working_directory() as tmpdir:
os.mkdir('test_out')
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test_out.pdb'),
'test_out')
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test_info.txt'),
'test_out')
with utils.mocked_object(subprocess, 'check_call', mock_check_call):
res, num = bmi_feature_parser.get_cnc('test')
self.assertAlmostEqual(res[('ALA', 2, 'A')], 0.0, places=1)
self.assertAlmostEqual(res[('ALA', 1, 'A')], 0.8, places=1)
def test_get_cnc_pockets(self):
"""Test get_cnc() parsing of pocket information"""
with utils.temporary_working_directory() as tmpdir:
os.mkdir('test_out')
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test_out.pdb'),
'test_out')
shutil.copy(os.path.join(TOPDIR, 'test', 'input', 'test_info.txt'),
'test_out')
with utils.mocked_object(subprocess, 'check_call',
mock_check_call):
res, num = bmi_feature_parser.get_cnc('test')
self.assertAlmostEqual(res[('ALA', 2, 'A')], 0.0, places=1)
self.assertAlmostEqual(res[('ALA', 1, 'A')], 0.8, places=1)