def setup(self):
self.mainFrame = qt.QFrame()
frameLayout = qt.QGridLayout()
self.mainFrame.setLayout(frameLayout)
self.layout.addWidget(self.mainFrame)
self.saveButton = ctk.ctkPushButton()
self.saveButton.text = "Save"
self.saveButton.toolTip = "Save the current table"
self.saveButton.objectName = "reportSaveButton"
self.saveButton.setIcon(qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveButton.setIconSize(qt.QSize(24, 24))
frameLayout.addWidget(self.saveButton, 0, 0)
self.openButton = ctk.ctkPushButton()
self.openButton.text = "Open"
self.openButton.toolTip = "Open all the results saved"
self.openButton.objectName = "reportOpenButton"
self.openButton.setIcon(qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.openButton.setIconSize(qt.QSize(24,24))
frameLayout.addWidget(self.openButton, 0, 1)
self.exportButton = ctk.ctkPushButton()
self.exportButton.text = "Export"
self.exportButton.toolTip = "Export all the saved results to a CSV file"
self.exportButton.objectName = "reportExportButton"
self.exportButton.setIcon(qt.QIcon("{0}/export-csv.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exportButton.setIconSize(qt.QSize(24,24))
frameLayout.addWidget(self.exportButton, 0, 2)
self.removeButton = ctk.ctkPushButton()
self.removeButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(24,24))
self.removeButton.text = "Clean cache"
frameLayout.addWidget(self.removeButton, 0, 3)
self.printButton = ctk.ctkPushButton()
self.printButton.text = "Print"
self.printButton.toolTip = "Print report"
self.printButton.objectName = "reportPrintButton"
self.printButton.setIcon(qt.QIcon("{0}/print.png".format(SlicerUtil.CIP_ICON_DIR)))
self.printButton.setIconSize(qt.QSize(24,24))
self.printButton.setVisible(False) # By default, this button will be hidden
frameLayout.addWidget(self.printButton, 0, 4)
self.additionalComentsLabel = qt.QLabel("Additional comments:")
self.additionalComentsLabel.setStyleSheet("margin-top: 3px")
frameLayout.addWidget(self.additionalComentsLabel, 1, 0, 1, 2)
self.additionalComentsTextEdit = CollapsibleMultilineText()
frameLayout.addWidget(self.additionalComentsTextEdit, 1, 1, 1, 3)
self.openButton.connect('clicked()', self.onShowStoredData)
self.saveButton.connect('clicked()', self.onSave)
self.exportButton.connect('clicked()', self.onExport)
self.printButton.connect('clicked()', self.onPrintReport)
self.removeButton.connect('clicked()', self.onRemoveStoredData)
def __init__(self, parent):
"""
Window that display the data
:param parent: CaseReportsWidget object
"""
super(CaseReportsWindow, self).__init__()
self.mainLayout = qt.QVBoxLayout(self)
self.setLayout(self.mainLayout)
self.resize(400, 300)
self.label = qt.QLabel("Data stored in the module: ")
self.label.setStyleSheet("margin: 10px 0 15px 0")
self.mainLayout.addWidget(self.label)
self.tableView = slicer.qMRMLTableView()
self.tableView.setColumnWidth(0, 125)
self.tableView.setMRMLTableNode(parent.logic.tableNode)
self.tableView.setFirstRowLocked(True) # First row will be headers
self.tableView.setSortingEnabled(True)
self.tableView.setSizePolicy(qt.QSizePolicy.Expanding,
qt.QSizePolicy.Expanding)
self.mainLayout.addWidget(self.tableView)
self.expandRowsButton = ctk.ctkPushButton()
self.expandRowsButton.text = "Expand rows"
self.expandRowsButton.toolTip = "Change the height of the rows to show/hide all the multiline data"
self.expandRowsButton.setFixedWidth(150)
self.expandRowsButton.setIcon(
qt.QIcon("{0}/reload.png".format(SlicerUtil.CIP_ICON_DIR)))
self.expandRowsButton.setIconSize(qt.QSize(24, 24))
self.mainLayout.addWidget(self.expandRowsButton)
self.exportButton = ctk.ctkPushButton()
self.exportButton.text = "Export"
self.exportButton.toolTip = "Export to a CVS file"
self.exportButton.setFixedWidth(150)
self.exportButton.setIcon(
qt.QIcon("{0}/export-csv.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exportButton.setIconSize(qt.QSize(24, 24))
self.mainLayout.addWidget(self.exportButton)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Clean"
self.removeButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(24, 24))
self.removeButton.setFixedWidth(150)
self.mainLayout.addWidget(self.removeButton)
self.expandRowsButton.connect('clicked()', parent.onExpandRows)
self.exportButton.connect('clicked()', parent.onExport)
self.removeButton.connect('clicked()', parent.onRemoveStoredData)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_PAARatioLogic()
#
# Create all the widgets. Example Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
self.mainAreaLayout = qt.QGridLayout(mainAreaCollapsibleButton)
self.label = qt.QLabel("Select the volume")
self.label.setStyleSheet("margin:10px 0 20px 7px")
self.mainAreaLayout.addWidget(self.label, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.name = "paa_volumeSelector"
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = True
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setStyleSheet(
"margin:0px 0 0px 0; padding:2px 0 2px 5px")
self.mainAreaLayout.addWidget(self.volumeSelector, 0, 1)
self.jumptToTemptativeSliceButton = ctk.ctkPushButton()
self.jumptToTemptativeSliceButton.name = "jumptToTemptativeSliceButton"
self.jumptToTemptativeSliceButton.text = "Jump to temptative slice"
self.jumptToTemptativeSliceButton.toolTip = "Jump to the best estimated slice to place the rulers"
self.jumptToTemptativeSliceButton.setIcon(
qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.jumptToTemptativeSliceButton.setIconSize(qt.QSize(20, 20))
self.jumptToTemptativeSliceButton.setStyleSheet("font-weight: bold;")
# self.jumptToTemptativeSliceButton.setFixedWidth(140)
self.mainAreaLayout.addWidget(self.jumptToTemptativeSliceButton, 1, 1)
### Structure Selector
self.structuresGroupbox = qt.QGroupBox("Select the structure")
self.groupboxLayout = qt.QVBoxLayout()
self.structuresGroupbox.setLayout(self.groupboxLayout)
self.mainAreaLayout.addWidget(self.structuresGroupbox, 2, 0)
self.structuresButtonGroup = qt.QButtonGroup()
# btn = qt.QRadioButton("None")
# btn.visible = False
# self.structuresButtonGroup.addButton(btn)
# self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Both")
btn.name = "paaButton"
btn.checked = True
self.structuresButtonGroup.addButton(btn, 0)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Pulmonary Arterial")
btn.name = "paRadioButton"
self.structuresButtonGroup.addButton(btn, 1)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Aorta")
btn.name = "aortaRadioButton"
self.structuresButtonGroup.addButton(btn, 2)
self.groupboxLayout.addWidget(btn)
### Buttons toolbox
self.buttonsToolboxFrame = qt.QFrame()
self.buttonsToolboxLayout = qt.QGridLayout()
self.buttonsToolboxFrame.setLayout(self.buttonsToolboxLayout)
self.mainAreaLayout.addWidget(self.buttonsToolboxFrame, 2, 1)
self.placeRulersButton = ctk.ctkPushButton()
self.placeRulersButton.text = "Place ruler/s"
self.placeRulersButton.name = "placeRulersButton"
self.placeRulersButton.toolTip = "Place the ruler/s for the selected structure/s in the current slice"
self.placeRulersButton.setIcon(
qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeRulersButton.setIconSize(qt.QSize(20, 20))
self.placeRulersButton.setFixedWidth(105)
self.placeRulersButton.setStyleSheet("font-weight:bold")
self.buttonsToolboxLayout.addWidget(self.placeRulersButton, 0, 0)
self.moveUpButton = ctk.ctkPushButton()
self.moveUpButton.text = "Move up"
self.moveUpButton.toolTip = "Move the selected ruler/s one slice up"
self.moveUpButton.setIcon(
qt.QIcon("{0}/move_up.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveUpButton.setIconSize(qt.QSize(20, 20))
self.moveUpButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveUpButton, 0, 1)
self.moveDownButton = ctk.ctkPushButton()
self.moveDownButton.text = "Move down"
self.moveDownButton.toolTip = "Move the selected ruler/s one slice down"
self.moveDownButton.setIcon(
qt.QIcon("{0}/move_down.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveDownButton.setIconSize(qt.QSize(20, 20))
self.moveDownButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveDownButton, 0, 2)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Remove ALL rulers"
self.removeButton.toolTip = "Remove all the rulers for this volume"
self.removeButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(20, 20))
self.buttonsToolboxLayout.addWidget(self.removeButton, 1, 1, 1, 2, 2)
### Textboxes
self.textboxesFrame = qt.QFrame()
self.textboxesLayout = qt.QFormLayout()
self.textboxesFrame.setLayout(self.textboxesLayout)
self.textboxesFrame.setFixedWidth(190)
self.mainAreaLayout.addWidget(self.textboxesFrame, 3, 0)
self.paTextBox = qt.QLineEdit()
self.paTextBox.setReadOnly(True)
self.textboxesLayout.addRow("PA (mm): ", self.paTextBox)
self.aortaTextBox = qt.QLineEdit()
self.aortaTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Aorta (mm): ", self.aortaTextBox)
self.ratioTextBox = qt.QLineEdit()
self.ratioTextBox.name = "ratioTextBox"
self.ratioTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Ratio PA/A: ", self.ratioTextBox)
# Save case data
self.reportsCollapsibleButton = ctk.ctkCollapsibleButton()
self.reportsCollapsibleButton.text = "Reporting"
self.layout.addWidget(self.reportsCollapsibleButton)
self.reportsLayout = qt.QHBoxLayout(self.reportsCollapsibleButton)
self.storedColumnNames = [
"caseId", "paDiameterMm", "aortaDiameterMm", "pa1r", "pa1a",
"pa1s", "pa2r", "pa2a", "pa2s", "a1r", "a1a", "a1s", "a2r", "a2a",
"a2s"
]
columns = CaseReportsWidget.getColumnKeysNormalizedDictionary(
self.storedColumnNames)
self.reportsWidget = CaseReportsWidget(
self.moduleName,
columns,
parentWidget=self.reportsCollapsibleButton)
self.reportsWidget.setup()
# Init state
self.resetModuleState()
self.preventSavingState = False
self.saveStateBeforeEnteringModule()
self.preventSavingState = True
self.switchToRedView()
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
self.layout.addStretch()
# Connections
self.observers = []
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.onVolumeSelectorChanged)
self.jumptToTemptativeSliceButton.connect(
'clicked()', self.onJumpToTemptativeSliceButtonClicked)
self.placeRulersButton.connect('clicked()', self.onPlaceRulersClicked)
self.moveUpButton.connect('clicked()', self.onMoveUpRulerClicked)
self.moveDownButton.connect('clicked()', self.onMoveDownRulerClicked)
self.removeButton.connect('clicked()', self.onRemoveRulerClicked)
self.reportsWidget.addObservable(
self.reportsWidget.EVENT_SAVE_BUTTON_CLICKED, self.onSaveReport)
# Init state
self.resetModuleState()
self.preventSavingState = False
self.saveStateBeforeEnteringModule()
self.preventSavingState = True
def setup(self):
"""Init the widget """
# self.firstLoad = True
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self._initLogic_()
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setMinimumWidth(150)
self.volumeSelector.setStyleSheet("margin: 15px 0")
# self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 2)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self._onMainVolumeChanged_)
### Radio buttons frame
self.radioButtonsFrame = qt.QFrame()
self.radioButtonsLayout = qt.QHBoxLayout(self.radioButtonsFrame)
self.typesFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.typesFrame)
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
labelsStyle = "font-weight: bold; margin: 0 0 10px 0px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select type")
typesLabel.setStyleSheet(labelsStyle)
self.typesLayout.addWidget(typesLabel)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.keys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
# The content will be loaded dynamically every time the main type is modified
self.subtypesFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.subtypesFrame)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
subtypesLabel = qt.QLabel("Select subtype")
subtypesLabel.setStyleSheet(labelsStyle)
self.subtypesLayout.addWidget(subtypesLabel)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
# Add all the subtypes (we will filter later in "updateState" function)
for key in self.logic.params.subtypes.keys():
# Build the description
rbitem = qt.QRadioButton(self.logic.params.getSubtypeLabel(key))
self.subtypesRadioButtonGroup.addButton(rbitem, key)
self.subtypesLayout.addWidget(rbitem,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.addStretch()
# Region radio buttons
self.regionsFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.regionsFrame)
self.regionsLayout = qt.QVBoxLayout(self.regionsFrame)
regionsLabel = qt.QLabel("Select region")
regionsLabel.setStyleSheet(labelsStyle)
self.regionsLayout.addWidget(regionsLabel)
self.regionsLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.regionsLayout.setStretch(0, 0)
self.regionsRadioButtonGroup = qt.QButtonGroup()
self.regionsFrame = qt.QFrame()
# Add all the regions
for key in self.logic.params.regions.keys():
# Build the description
rbitem = qt.QRadioButton(self.logic.params.getRegionLabel(key))
self.regionsRadioButtonGroup.addButton(rbitem, key)
self.regionsLayout.addWidget(rbitem,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.regionsLayout.addStretch()
self.regionsRadioButtonGroup.buttons()[0].setChecked(True)
# Artifact radio buttons (Add them to the same layout as the type)
# self.separatorLabel = qt.QLabel("------------")
# labelsStyle = "margin: 5px 0 5px 0;"
# self.separatorLabel.setStyleSheet(labelsStyle)
# self.typesLayout.addWidget(self.separatorLabel)
# self.artifactsLabel = qt.QLabel("Select artifact")
# labelsStyle = "font-weight: bold; margin: 15px 0 10px 0;"
# self.artifactsLabel.setStyleSheet(labelsStyle)
# self.typesLayout.addWidget(self.artifactsLabel)
# self.artifactsRadioButtonGroup = qt.QButtonGroup()
# for artifactId in self.logic.params.artifacts.iterkeys():
# rbitem = qt.QRadioButton(self.logic.params.getArtifactLabel(artifactId))
# self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
# self.typesLayout.addWidget(rbitem)
# self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
#
self.typesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesLayout.addStretch()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)",
self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSecondaryRadioButtonClicked__)
self.regionsRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSecondaryRadioButtonClicked__)
# self.artifactsRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onTypesRadioButtonClicked__)
self.mainLayout.addWidget(self.radioButtonsFrame, 2, 0, 1, 3,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save results")
self.saveResultsButton.toolTip = "Save the results labelmap in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.saveResultsButton.setFixedWidth(135)
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
self.saveResultsButton.connect('clicked()',
self._onSaveResultsButtonClicked_)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(440)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)", self._onSaveResultsDirectoryChanged_)
self._createSegmentEditorWidget_()
# MIP viewer (by default it will be hidden)
self.mipCollapsibleButton = ctk.ctkCollapsibleButton()
self.mipCollapsibleButton.text = "MIP viewer"
mipLayout = qt.QVBoxLayout(self.mipCollapsibleButton)
self.mainLayout.addWidget(self.mipCollapsibleButton)
self.mipViewer = CIPUI.MIPViewerWidget(mipLayout)
self.mipCollapsibleButton.setVisible(False)
self.mipViewer.setup()
self.mipViewer.isCrosshairEnabled = False
self.mipCollapsibleButton.collapsed = True
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for event in order to save the current labelmap before moving to the next case
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_NEXT,
self._checkSaveChanges_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_PREVIOUS,
self._checkSaveChanges_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_LABELMAP_LOAD,
self._onPreNavigatorLabelmapLoaded_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_LABELMAP_LOADED,
self._onNavigatorLabelmapLoaded_)
self.layout.addStretch()
# Extra Connections
self._createSceneObservers_()
self.disableEvents = False
self.setMainTypeGUIProperties()
def setup(self):
"""Init the widget """
# self.firstLoad = True
ScriptedLoadableModuleWidget.setup(self)
self.disableEvents = False
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self._initLogic_()
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
# self.layout.addWidget(self.mainAreaCollapsibleButton)
# self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
self.mainLayout = qt.QFormLayout(self.mainAreaCollapsibleButton)
row = 0
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
# self.mainLayout.addWidget(volumeLabel, row, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setMinimumWidth(150)
# self.volumeSelector.setStyleSheet("margin: 15px 0")
# self.volumeSelector.selectNodeUponCreation = False
#self.mainLayout.addWidget(self.volumeSelector, row, 1)
self.mainLayout.addRow(volumeLabel, self.volumeSelector)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self._onMainVolumeChanged_)
row += 1
lb = qt.QLabel("Click to select the calibration type and, if needed, modify the HU value expected for that area")
lb.setStyleSheet("margin:10px 0 10px 5px")
self.mainLayout.addRow(lb)
#self.mainLayout.addWidget(lb, row, 0, 1, 2)
self.typeRadioButtonGroup = qt.QButtonGroup()
self.typeRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onTypeRadioButtonClicked__)
row += 1
self.rbAir = qt.QRadioButton("Air")
self.rbAir.setStyleSheet("margin-left:10px; margin-top: 5px")
self.typeRadioButtonGroup.addButton(self.rbAir, 1)
# self.mainLayout.addWidget(self.rbAir, row, 0)
self.txtAir = qt.QLineEdit()
self.txtAir.setText("-1000")
self.txtAir.setFixedWidth(80)
self.txtAir.setValidator(qt.QIntValidator())
self.mainLayout.addRow(self.rbAir, self.txtAir)
row += 1
self.rbBlood = qt.QRadioButton("Blood")
self.rbBlood.setStyleSheet("margin-left:10px; margin-top: 5px")
self.typeRadioButtonGroup.addButton(self.rbBlood, 2)
# self.mainLayout.addWidget(self.rbBlood, row, 0)
self.txtBlood = qt.QLineEdit()
self.txtBlood.setText("50")
self.txtBlood.setFixedWidth(80)
self.txtBlood.setValidator(qt.QIntValidator())
# self.mainLayout.addWidget(self.txtBlood, row, 1)
self.mainLayout.addRow(self.rbBlood, self.txtBlood)
row += 1
# Calibrate button
self.calibrateButton = ctk.ctkPushButton()
self.calibrateButton.setText("Calibrate")
self.calibrateButton.toolTip = "Run the calibration"
self.calibrateButton.setIcon(qt.QIcon("{0}/scale.png".format(SlicerUtil.CIP_ICON_DIR)))
self.calibrateButton.setIconSize(qt.QSize(20, 20))
self.calibrateButton.setFixedWidth(135)
self.mainLayout.addRow(None, self.calibrateButton)
self.calibrateButton.connect('clicked()', self._onCalibrateButtonClicked_)
self._createEditorWidget_()
self.setEditorValues()
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_ParenchymaSubtypeTrainingLogic()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
labelsStyle = "font-weight: bold; margin: 0 0 5px 5px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select the type")
typesLabel.setStyleSheet(labelsStyle)
typesLabel.setFixedHeight(15)
self.mainLayout.addWidget(typesLabel, 1, 0)
self.typesFrame = qt.QFrame()
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
self.mainLayout.addWidget(self.typesFrame, 2, 0,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
subtypesLabel = qt.QLabel("Select the subtype")
subtypesLabel.setStyleSheet(labelsStyle)
subtypesLabel.setFixedHeight(15)
self.mainLayout.addWidget(subtypesLabel, 1, 1)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
self.subtypesFrame = qt.QFrame()
self.subtypesFrame.setMinimumHeight(275)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.setStretch(0, 0)
self.mainLayout.addWidget(
self.subtypesFrame, 2, 1,
SlicerUtil.ALIGNMENT_VERTICAL_TOP) # Put the frame in the top
# The content will be loaded dynamically every time the main type is modified
# Artifact radio buttons
self.artifactsLabel = qt.QLabel("Artifact")
self.artifactsLabel.setStyleSheet(labelsStyle)
self.artifactsLabel.setFixedHeight(15)
self.mainLayout.addWidget(self.artifactsLabel, 1, 2)
#self.mainLayout.addWidget(qt.QLabel("Select the artifact"), 1, 1)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
self.artifactsFrame = qt.QFrame()
self.artifactsLayout = qt.QVBoxLayout(self.artifactsFrame)
self.mainLayout.addWidget(self.artifactsFrame, 2, 2,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
for artifactId in self.logic.params.artifacts.iterkeys():
rbitem = qt.QRadioButton(
self.logic.params.getArtifactLabel(artifactId))
self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
self.artifactsLayout.addWidget(rbitem)
self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(
qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading a new labelmap
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_LABELMAP_LOADED,
self.__onNewILDClassificationLabelmapLoaded__)
self.layout.addStretch()
self.updateState()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)",
self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSubtypesRadioButtonClicked__)
self.artifactsRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSubtypesRadioButtonClicked__)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.__onCurrentNodeChanged__)
self.loadButton.connect('clicked()', self.openFiducialsFile)
self.removeLastFiducialButton.connect(
'clicked()', self.__onRemoveLastFiducialButtonClicked__)
# self.saveResultsOpenDirectoryDialogButton.connect('clicked()', self.onOpenDirectoryDialogButtonClicked)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)",
self.__onSaveResultsDirectoryChanged__)
self.saveResultsButton.connect('clicked()',
self.__onSaveResultsButtonClicked__)
self.observers = []
self.observers.append(
slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.NodeAddedEvent,
self.__onNodeAddedObserver__))
self.observers.append(
slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.EndCloseEvent,
self.__onSceneClosed__))
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self._initLogic_()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.__onCurrentNodeChanged__)
# Radio buttons frame. This will be filled by every child module
self.radioButtonsFrame = qt.QFrame()
self.mainLayout.addWidget(self.radioButtonsFrame, 2, 0, 1, 3,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(
qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
self.loadButton.connect('clicked()', self.openFiducialsFile)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
self.removeLastFiducialButton.connect(
'clicked()', self.__onRemoveLastFiducialButtonClicked__)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.saveResultsButton.setFixedWidth(135)
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
self.saveResultsButton.connect('clicked()',
self.__onSaveResultsButtonClicked__)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)",
self.__onSaveResultsDirectoryChanged__)
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading a new labelmap
# self.caseNavigatorWidget.addObservable(self.caseNavigatorWidget.EVENT_LABELMAP_LOADED, self.__onNewILDClassificationLabelmapLoaded__)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_BUNDLE_CASE_FINISHED,
self.__onFinishCaseBundleLoad__)
self.layout.addStretch()
# Extra Connections
self._createSceneObservers_()
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
self.caseInfoCollapsibleButton = ctk.ctkCollapsibleButton()
self.caseInfoCollapsibleButton.text = "Case information"
self.caseInfoCollapsibleButton.collapsed = False
self.layout.addWidget(self.caseInfoCollapsibleButton)
self.caseAreaLayout = qt.QGridLayout(self.caseInfoCollapsibleButton)
# Select case
row = 0
self.loadCaseButton = ctk.ctkPushButton()
self.loadCaseButton.text = "Load case"
self.loadCaseButton.toolTip = "Load a case folder"
self.caseAreaLayout.addWidget(self.loadCaseButton, row, 0)
# Reset button
self.resetButton = ctk.ctkPushButton()
self.resetButton.text = "Close case"
self.resetButton.toolTip = "Close the current case"
self.caseAreaLayout.addWidget(self.resetButton, row, 1)
# Case info
row += 1
self.caseInfoFrame = qt.QFrame()
self.caseInfoFrame.setFrameStyle(0x0002 | 0x0010)
self.caseInfoFrame.lineWidth = 2
self.caseInfoFrame.setStyleSheet(
"background-color: #EEEEEE; margin: 10px")
self.caseAreaLayout.addWidget(self.caseInfoFrame, row, 0, 1, 2)
self.caseInfoFrameLayout = qt.QGridLayout()
self.caseInfoFrame.setLayout(self.caseInfoFrameLayout)
self.caseIdLabel = qt.QLabel("Case id: ")
self.caseIdLabel.setStyleSheet("font-weight: bold")
self.caseInfoFrameLayout.addWidget(self.caseIdLabel, 0, 0)
self.showEnhancementCheckboxGroup = qt.QButtonGroup()
self.showJustOriginalButton = qt.QRadioButton("Original only")
self.showJustOriginalButton.setChecked(True)
self.showEnhancementCheckboxGroup.addButton(
self.showJustOriginalButton, 0)
self.caseInfoFrameLayout.addWidget(self.showJustOriginalButton, 1, 0)
self.showOriginalPlusEnhancedButton = qt.QRadioButton(
"Original and enhanced")
self.showEnhancementCheckboxGroup.addButton(
self.showOriginalPlusEnhancedButton, 1)
self.caseInfoFrameLayout.addWidget(self.showOriginalPlusEnhancedButton,
2, 0)
self.showJustEnhancedButton = qt.QRadioButton("Enhanced only")
self.showEnhancementCheckboxGroup.addButton(
self.showJustEnhancedButton, 2)
self.caseInfoFrameLayout.addWidget(self.showJustEnhancedButton, 3, 0)
# Center Volumes button
self.centerVolumesButton = ctk.ctkPushButton()
self.centerVolumesButton.text = "Center image/s"
self.centerVolumesButton.toolTip = "Center all the current visible images"
self.centerVolumesButton.setFixedWidth(200)
# self.centerVolumesButton.toolTip = "Load a case folder"
self.caseInfoFrameLayout.addWidget(self.centerVolumesButton, 4, 0)
# Enhancement fine tuning
self.vascularFactorLabel = qt.QLabel("Vascular factor")
self.vascularFactorLabel.setStyleSheet("font-weight: bold")
self.caseInfoFrameLayout.addWidget(self.vascularFactorLabel, 0, 1)
self.vascularFactorSlider = qt.QSlider()
self.vascularFactorSlider.orientation = 2 # Vertical
self.vascularFactorSlider.value = 5
self.vascularFactorSlider.minimum = 0
self.vascularFactorSlider.maximum = 10
# self.vascularFactorSlider.setStyleSheet("margin-top:10px;padding-top:20px")
# self.vascularFactorSlider.setToolTip("Move the slider for a fine tuning segmentation")
self.caseInfoFrameLayout.addWidget(self.vascularFactorSlider, 1, 1, 4,
1, 0x0004)
self.enhancementFactorLabel = qt.QLabel("Enhancement factor")
self.enhancementFactorLabel.setStyleSheet("font-weight: bold")
self.caseInfoFrameLayout.addWidget(self.enhancementFactorLabel, 0, 2)
self.enhancementFactorSlider = qt.QSlider()
self.enhancementFactorSlider.orientation = 2 # Vertical
self.enhancementFactorSlider.minimum = 0
self.enhancementFactorSlider.maximum = 10
self.enhancementFactorSlider.value = 5
# self.vascularFactorSlider.setStyleSheet("margin-top:10px;padding-top:20px")
# self.vascularFactorSlider.setToolTip("Move the slider for a fine tuning segmentation")
self.caseInfoFrameLayout.addWidget(self.enhancementFactorSlider, 1, 2,
4, 1, 0x0004)
# Editor
row += 1
self.editorWidget = ui.CustomEditorWidget(self.parent)
self.editorWidget.setup()
self.editorCollapsibleButton = self.editorWidget.editLabelMapsFrame
self.editorCollapsibleButton.text = "Edit the current eye image"
self.editorCollapsibleButton.collapsed = False
self.editorWidget.toolsColor.terminologyCollapsibleButton.setVisible(
False)
self.layout.addWidget(self.editorCollapsibleButton)
### DIAGNOSIS
self.diagnosisCollapsibleButton = ctk.ctkCollapsibleButton()
self.diagnosisCollapsibleButton.text = "Diagnosis"
self.diagnosisCollapsibleButton.collapsed = False
self.layout.addWidget(self.diagnosisCollapsibleButton)
self.diagnosisAreaLayout = qt.QVBoxLayout(
self.diagnosisCollapsibleButton)
# Visual Acuity
label = qt.QLabel("Visual acuity (VA): ")
label.setStyleSheet("margin: 10px 0 0 10px; font-weight: bold")
self.diagnosisAreaLayout.addWidget(label)
self.vaFrame = qt.QFrame()
self.vaFrame.setFrameStyle(0x0002 | 0x0010)
self.vaFrame.lineWidth = 2
self.vaFrame.setStyleSheet("background-color: #EEEEEE; margin: 10px")
self.vaFrame.setFixedWidth(240)
self.diagnosisAreaLayout.addWidget(self.vaFrame)
self.vaFrameLayout = qt.QGridLayout(self.vaFrame)
self.vaFrameLayout.addWidget(qt.QLabel("OS"), 0, 0)
self.osLineEdit = qt.QLineEdit()
self.osLineEdit.setFixedWidth(80)
self.osLineEdit.setStyleSheet("background-color: white")
self.vaFrameLayout.addWidget(self.osLineEdit, 0, 1)
self.vaFrameLayout.addWidget(qt.QLabel("OD"), 1, 0)
self.odLineEdit = qt.QLineEdit()
self.odLineEdit.setFixedWidth(80)
self.odLineEdit.setStyleSheet("background-color: white")
self.vaFrameLayout.addWidget(self.odLineEdit, 1, 1)
self.vaModalityButtonGroup = qt.QButtonGroup()
self.scvaRadioButton = qt.QRadioButton()
self.scvaRadioButton.setText("SCVA")
self.vaFrameLayout.addWidget(self.scvaRadioButton, 0, 2)
self.vaModalityButtonGroup.addButton(self.scvaRadioButton)
self.bcvaRadioButton = qt.QRadioButton()
self.bcvaRadioButton.setText("BCVA")
self.vaFrameLayout.addWidget(self.bcvaRadioButton, 1, 2)
self.vaModalityButtonGroup.addButton(self.bcvaRadioButton)
self.ucvaRadioButton = qt.QRadioButton()
self.ucvaRadioButton.setText("UCVA")
self.vaFrameLayout.addWidget(self.ucvaRadioButton, 2, 2)
self.vaModalityButtonGroup.addButton(self.ucvaRadioButton)
# Problems detected
label = qt.QLabel("Problems detected: ")
label.setStyleSheet("margin: 10px 0 0 10px; font-weight: bold")
self.diagnosisAreaLayout.addWidget(label)
self.problemsFrame = qt.QFrame()
self.problemsFrame.setFrameStyle(0x0002 | 0x0010)
self.problemsFrame.lineWidth = 2
self.problemsFrame.setStyleSheet(
"background-color: #EEEEEE; margin: 10px")
self.diagnosisAreaLayout.addWidget(self.problemsFrame)
self.problemsFrameLayout = qt.QGridLayout()
self.problemsFrame.setLayout(self.problemsFrameLayout)
self.problemsButtons = []
self.microaneurysmsCheckbox = qt.QCheckBox()
self.microaneurysmsCheckbox.setText("Microaneurysms")
self.problemsFrameLayout.addWidget(self.microaneurysmsCheckbox, 0, 0)
self.problemsButtons.append(self.microaneurysmsCheckbox)
self.exudatesCheckbox = qt.QCheckBox()
self.exudatesCheckbox.setText("Exudates")
self.problemsFrameLayout.addWidget(self.exudatesCheckbox, 0, 1)
self.problemsButtons.append(self.exudatesCheckbox)
self.haemorrhagesCheckbox = qt.QCheckBox()
self.haemorrhagesCheckbox.setText("Haemorrhages")
self.problemsFrameLayout.addWidget(self.haemorrhagesCheckbox, 0, 2)
self.problemsButtons.append(self.haemorrhagesCheckbox)
self.cottonWoolSpotsCheckbox = qt.QCheckBox()
self.cottonWoolSpotsCheckbox.setText("Cotton wool spots")
self.problemsFrameLayout.addWidget(self.cottonWoolSpotsCheckbox, 1, 0)
self.problemsButtons.append(self.cottonWoolSpotsCheckbox)
self.NeovascularisationCheckbox = qt.QCheckBox()
self.NeovascularisationCheckbox.setText("Neovascularisation")
self.problemsFrameLayout.addWidget(self.NeovascularisationCheckbox, 1,
1)
self.problemsButtons.append(self.NeovascularisationCheckbox)
label = qt.QLabel("Diabetic retinopathy diagnosis: ")
label.setStyleSheet("margin: 10px 0 0 10px; font-weight: bold")
self.diagnosisAreaLayout.addWidget(label)
# Diabetic Retinopathy diagnosis
self.diabeticRetinopathyDiagnosisFrame = qt.QFrame()
self.diabeticRetinopathyDiagnosisFrame.setFrameStyle(0x0002 | 0x0010)
self.diabeticRetinopathyDiagnosisFrame.lineWidth = 2
self.diabeticRetinopathyDiagnosisFrame.setStyleSheet(
"background-color: #EEEEEE; margin: 10px")
self.diagnosisAreaLayout.addWidget(
self.diabeticRetinopathyDiagnosisFrame)
self.diabeticRetinopathyDiagnosisFrameLayout = qt.QHBoxLayout()
self.diabeticRetinopathyDiagnosisFrame.setLayout(
self.diabeticRetinopathyDiagnosisFrameLayout)
self.diagnosisRadioButtonGroup = qt.QButtonGroup()
for i in range(5):
rb = qt.QRadioButton(str(i))
self.diagnosisRadioButtonGroup.addButton(rb, i)
self.diabeticRetinopathyDiagnosisFrameLayout.addWidget(rb)
self.diagnosisRadioButtonGroup.buttons()[0].setChecked(True)
# Additional comments
label = qt.QLabel("Additional comments:")
label.setStyleSheet("margin: 10px 0 0 10px; font-weight: bold")
self.diagnosisAreaLayout.addWidget(label)
row += 1
self.additionalCommentsText = qt.QTextEdit()
self.additionalCommentsText.setStyleSheet("margin: 10px")
self.diagnosisAreaLayout.addWidget(self.additionalCommentsText)
self.saveReportButton = ctk.ctkPushButton()
self.saveReportButton.text = "Save report"
self.saveReportButton.setFixedWidth(300)
self.diagnosisAreaLayout.addWidget(self.saveReportButton)
self.printReportButton = ctk.ctkPushButton()
self.printReportButton.text = "Save and generate PDF"
self.printReportButton.setFixedWidth(300)
self.diagnosisAreaLayout.addWidget(self.printReportButton)
self.expertModeCollapsibleButton = ctk.ctkCollapsibleButton()
self.expertModeCollapsibleButton.text = "Expert mode"
self.expertModeCollapsibleButton.collapsed = True
self.layout.addWidget(self.expertModeCollapsibleButton)
self.expertModeLayout = qt.QVBoxLayout(
self.expertModeCollapsibleButton)
self.expertModeCheckbox = qt.QCheckBox("Activate expert mode")
self.expertModeCheckbox.checked = False
self.expertModeLayout.addWidget(self.expertModeCheckbox)
self.layout.addStretch(1)
# Connections
self.loadCaseButton.connect('clicked()', self.__onLoadCaseClicked__)
# self.loadReportButton.connect('clicked()', self.__onLoadReportClicked__)
self.showEnhancementCheckboxGroup.connect(
"buttonClicked (int)", self.__onEnhancementButtonGroupClicked__)
self.centerVolumesButton.connect('clicked()',
SlicerUtil.centerAllVolumes)
self.vascularFactorSlider.connect('sliderReleased()',
self.__onEnhancementFineTuning__)
self.enhancementFactorSlider.connect('sliderReleased()',
self.__onEnhancementFineTuning__)
self.saveReportButton.connect('clicked()',
self.__onSaveReportClicked__)
self.printReportButton.connect('clicked()',
self.__onPrintReportClicked__)
self.resetButton.connect('clicked()', self.reset)
self.expertModeCheckbox.connect("stateChanged(int)",
self.__onExpertModeStateChanged__)
slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.EndCloseEvent,
self.__onSceneClosed__)
# Set default layout Red
SlicerUtil.changeLayoutRedSingle()
self.refreshUI()
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Format Scene Area
#
loadGroupBox = ctk.ctkCollapsibleGroupBox()
loadGroupBox.setTitle('Sequence Data')
self.layout.addWidget(loadGroupBox)
loadGroupBoxLayout = qt.QFormLayout(loadGroupBox)
self.volumeSequenceComboBox = slicer.qMRMLNodeComboBox()
self.volumeSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.volumeSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.volumeSequenceComboBox.noneEnabled = False
loadGroupBoxLayout.addRow('Volume Sequence: ',self.volumeSequenceComboBox)
self.transformSequenceComboBox = slicer.qMRMLNodeComboBox()
self.transformSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.transformSequenceComboBox.selectNodeUponCreation = False
self.transformSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.transformSequenceComboBox.noneEnabled = True
loadGroupBoxLayout.addRow('Transform Sequence: ',self.transformSequenceComboBox)
self.labelSequenceComboBox = slicer.qMRMLNodeComboBox()
self.labelSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.labelSequenceComboBox.selectNodeUponCreation = False
self.labelSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.labelSequenceComboBox.noneEnabled = True
loadGroupBoxLayout.addRow('Label Sequence: ',self.labelSequenceComboBox)
sliceButtonsLayout = qt.QHBoxLayout()
loadGroupBoxLayout.addRow('Slice Views: ',sliceButtonsLayout)
self.axialCheckbox = qt.QCheckBox('Axial')
self.axialCheckbox.checked = True
sliceButtonsLayout.addWidget(self.axialCheckbox)
self.sagittalCheckBox = qt.QCheckBox('Sagittal')
self.sagittalCheckBox.checked = True
sliceButtonsLayout.addWidget(self.sagittalCheckBox)
self.coronalCheckBox = qt.QCheckBox('Coronal')
self.coronalCheckBox.checked = False
sliceButtonsLayout.addWidget(self.coronalCheckBox)
formatSceneButton = qt.QPushButton('Format Scene')
loadGroupBoxLayout.addRow('',formatSceneButton)
#
# Editor Widget
#
editorWidget = slicer.modules.editor.widgetRepresentation().self()
self.labelEditor = editorWidget.editLabelMapsFrame
self.layout.addWidget(self.labelEditor)
self.labelEditor.collapsed = False
# add vertical spacer
self.layout.addStretch(1)
#
# Format Scene Widget
#
self.formatSceneWidget = slicer.qMRMLWidget()
self.formatSceneWidget.setWindowTitle('Format Scene View')
self.formatSceneWidgetLayout = qt.QGridLayout(self.formatSceneWidget)
nodeSelectionRegion = qt.QGroupBox()
self.formatSceneWidgetLayout.addWidget(nodeSelectionRegion,1,1,4,1)
nodeSelectionRegion.setTitle('Data Selection')
nodeSelectionLayout = qt.QVBoxLayout(nodeSelectionRegion)
volumeSelectionLabel = qt.QLabel('Volume Data')
nodeSelectionLayout.addWidget(volumeSelectionLabel)
volumeSelectionList = slicer.qMRMLListWidget()
nodeSelectionLayout.addWidget(volumeSelectionList)
transformSelectionLabel = qt.QLabel('Transforms')
nodeSelectionLayout.addWidget(transformSelectionLabel)
transformSelectionList = slicer.qMRMLListWidget()
nodeSelectionLayout.addWidget(transformSelectionList)
addToSceneArrow = ctk.ctkPushButton()
self.formatSceneWidgetLayout.addWidget(addToSceneArrow,2,2,1,1)
removeFromSceneArrow = ctk.ctkPushButton()
self.formatSceneWidgetLayout.addWidget(removeFromSceneArrow,3,2,1,1)
organizeSceneRegion = qt.QGroupBox()
self.formatSceneWidgetLayout.addWidget(organizeSceneRegion,1,3,4,5)
organizeSceneRegion.setTitle('Scene Format')
self.organizeSceneRegionLayout = qt.QGridLayout(organizeSceneRegion)
self.backgroundSceneButtons = []
backgroundVolumeBox = qt.QPushButton('Background')
backgroundVolumeBox.setCheckable(True)
#backgroundVolumeBox.connect('toggled(bool)',self.testClick)
self.organizeSceneRegionLayout.addWidget(backgroundVolumeBox,1,1,1,1)
self.backgroundSceneButtons.append(backgroundVolumeBox)
self.foregroundSceneButtons = []
foregroundVolumeBox = qt.QPushButton('Foreground')
foregroundVolumeBox.setCheckable(True)
self.organizeSceneRegionLayout.addWidget(foregroundVolumeBox,2,1,1,1)
#foregroundVolumeBox.connect('toggled(bool)',self.testClick)
backgroundVolumeBox.connect('clicked()',lambda i=1: self.backgroundButtonClicked(i))
foregroundVolumeBox.connect('clicked()',lambda i=1: self.foregroundButtonClicked(i))
self.backgroundSceneButtons.append(backgroundVolumeBox)
self.foregroundSceneButtons.append(foregroundVolumeBox)
#self.backgroundSceneButtons[0].connect('clicked(bool)', self.backgroundButtonClicked(1))
#self.foregroundSceneButtons[0].connect('clicked(bool)', self.foregroundButtonClicked(1))
self.addColumnButton = qt.QPushButton('+Add')
self.organizeSceneRegionLayout.addWidget(self.addColumnButton,1,2,1,1)
self.sceneColumns = 1
loadFormattedSceneButton = qt.QPushButton('Load Scene')
self.formatSceneWidgetLayout.addWidget(loadFormattedSceneButton,5,8,1,1)
# connections
formatSceneButton.connect('clicked(bool)', self.onFormatSceneButtonClicked)
self.addColumnButton.connect('clicked(bool)', self.onAddColumn)