def test_twoheaders(self):
with FastqWriter(self.path) as fq:
fq.write(Sequence("name", "CCATA", "!#!#!", second_header=True))
fq.write(Sequence("name2", "HELLO", "&&&!&", second_header=True))
assert fq._file.closed
with open(self.path) as t:
assert t.read() == '@name\nCCATA\n+name\n!#!#!\n@name2\nHELLO\n+name2\n&&&!&\n'
def test_write_to_file_like_object(self):
sio = StringIO()
with FastqWriter(sio) as fq:
fq.writeseq("name", "CCATA", "!#!#!")
fq.writeseq("name2", "HELLO", "&&&!&&")
assert sio.getvalue(
) == '@name\nCCATA\n+\n!#!#!\n@name2\nHELLO\n+\n&&&!&&\n'
def test(self):
with FastqWriter(self.path) as fq:
fq.writeseq("name", "CCATA", "!#!#!")
fq.writeseq("name2", "HELLO", "&&&!&&")
assert fq._file.closed
with open(self.path) as t:
assert t.read() == '@name\nCCATA\n+\n!#!#!\n@name2\nHELLO\n+\n&&&!&&\n'