def testRequiredFields(self):
required = HostWgsRawSeqSet.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(len(required) > 0,
"required_field() did not return empty value.")
def testRequiredFields(self):
""" Test the required_fields() static method. """
required = HostWgsRawSeqSet.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(len(required) > 0,
"required_field() did not return empty value.")
import json
import logging
from cutlass import HostWgsRawSeqSet
from cutlass import iHMPSession
from pprint import pprint
import tempfile
import sys
username = "******"
password = "******"
session = iHMPSession(username, password)
print("Required fields: ")
print(HostWgsRawSeqSet.required_fields())
seq_set = HostWgsRawSeqSet()
seq_set.checksums = { "md5": "72bdc024d83226ccc90fbd2177e78d56" }
seq_set.comment = "test comment. Hello world!"
seq_set.exp_length = 2000
seq_set.format = "fasta"
seq_set.format_doc = "url"
seq_set.seq_model = "a machine"
seq_set.sequence_type = "nucleotide"
seq_set.size = 3000
seq_set.study = "prediabetes"
print("Creating a temp file for example/testing purposes.")
temp_file = tempfile.NamedTemporaryFile(delete=False).name
