def test_sequential_workflow(tmp_path: Path) -> None:
test_file = "tests/wf/count-lines1-wf.cwl"
executor = MultithreadedJobExecutor()
runtime_context = RuntimeContext()
runtime_context.outdir = str(tmp_path)
runtime_context.select_resources = executor.select_resources
factory = get_windows_safe_factory(
executor=executor, runtime_context=runtime_context
)
echo = factory.make(get_data(test_file))
file_contents = {"class": "File", "location": get_data("tests/wf/whale.txt")}
assert echo(file1=file_contents) == {"count_output": 16}
def test_sequential_workflow(self):
test_file = "tests/wf/count-lines1-wf.cwl"
executor = MultithreadedJobExecutor()
runtime_context = RuntimeContext()
runtime_context.select_resources = executor.select_resources
factory = get_windows_safe_factory(
executor=executor, runtime_context=runtime_context)
echo = factory.make(get_data(test_file))
self.assertEqual(
echo(file1={"class": "File",
"location": get_data("tests/wf/whale.txt")}),
{"count_output": 16})
def test_sequential_workflow(self):
test_file = "tests/wf/count-lines1-wf.cwl"
executor = MultithreadedJobExecutor()
runtime_context = RuntimeContext()
runtime_context.select_resources = executor.select_resources
factory = get_windows_safe_factory(executor=executor,
runtime_context=runtime_context)
echo = factory.make(get_data(test_file))
self.assertEqual(
echo(file1={
"class": "File",
"location": get_data("tests/wf/whale.txt")
}), {"count_output": 16})
def test_sequential_workflow(tmpdir):
load_tool.loaders = {}
test_file = "tests/wf/count-lines1-wf.cwl"
executor = MultithreadedJobExecutor()
runtime_context = RuntimeContext()
runtime_context.outdir = str(tmpdir)
runtime_context.select_resources = executor.select_resources
factory = get_windows_safe_factory(
executor=executor, runtime_context=runtime_context)
echo = factory.make(get_data(test_file))
file_contents = {"class": "File",
"location": get_data("tests/wf/whale.txt")}
assert echo(file1=file_contents) == {"count_output": 16}