Python Pathway Exemples

Exemple #1

Fichier : create_species.py Projet : liudongliangHI/CyanoFactoryKB

    def handle_command(self, species_obj, revdetail, *args, **options):
        if not options["name"]:
            raise CommandError("name argument is mandatory")

        species_obj.name = options["name"]
        species_obj.save(revdetail)

        from cyano.models import Pathway
        Pathway.add_boehringer_pathway(species_obj, revdetail)

Exemple #2

Fichier : create_species.py Projet : CyanoFactory/CyanoFactoryKB

    def handle_command(self, species_obj, revdetail, *args, **options):
        if not options["name"]:
            raise CommandError("name argument is mandatory")
 
        species_obj.name = options["name"]
        species_obj.save(revdetail)

        from cyano.models import Pathway
        Pathway.add_boehringer_pathway(species_obj, revdetail)

Exemple #3

Fichier : add_kegg_pathways.py Projet : CyanoFactory/CyanoFactoryKB

 def handle_command(self, species, revdetail, *args, **options):        
     Pathway.add_kegg_pathway(species, revdetail)

Exemple #4

Fichier : add_boehringer_pathway.py Projet : liudongliangHI/CyanoFactoryKB

    def handle_command(self, species, revdetail, *args, **options):
        Pathway.add_boehringer_pathway(species, revdetail)

        self.stdout.write("Boehringer Pathway assigned")

Exemple #5

Fichier : add_boehringer_pathway.py Projet : CyanoFactory/CyanoFactoryKB

    def handle_command(self, species, revdetail, *args, **options):
        Pathway.add_boehringer_pathway(species, revdetail)

        self.stdout.write("Boehringer Pathway assigned")

Exemple #6

 def handle_command(self, species, revdetail, *args, **options):
     Pathway.add_kegg_pathway(species, revdetail)