def paragraph(self, coordinate, font, font_normal_size, indent=0):
x = coordinate.x_spot
three_quarters_size = config.font_small_size * 3 / 4
minimum_interval = three_quarters_size * (config.probe_name_length - 3)
txt_x = list()
for i in range(0, self.num_hit):
if i < 3 or x[i] >= (x[i - 3] + minimum_interval):
txt_x.append(x[i])
else:
txt_x.append(x[i - 3] + minimum_interval)
y = coordinate.y0
height_coordinate = [
y + (3 * config.font_small_size - 2) - (i * config.font_small_size)
for i in range(1, 4)
] * (self.num_hit)
self.drawing = \
eps.comment('SNP', indent=indent) + \
eps.newpath(indent=indent, colour='1 0.4 0', line_width=config.bold_line) + \
(''.join([eps.mt(i+config.cross_size, y + config.cross_size+config.rack_interval, indent=indent+4) + eps.lt(i-config.cross_size, y - config.cross_size+config.rack_interval, indent=indent+4) +
eps.mt(i-config.cross_size, y + config.cross_size + config.rack_interval, indent=indent+4) + eps.lt(i+config.cross_size, y - config.cross_size+config.rack_interval, indent=indent+4) for i in coordinate.x_spot]) +
eps.stroke(indent=indent)
)
self.typography = \
eps.comment('SNP', indent=indent) + \
eps.newpath(indent=indent, colour='0 0 0.9') + \
''.join([eps.center_txt(txt_x[i], height_coordinate[i], self.found_names[i], font, config.font_small_size, indent+4) for i in range(0, self.num_hit)]) + \
eps.stroke(indent=indent)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
tag = self.item.name
x0 = coordinate.x0
x1 = coordinate.x1
y = coordinate.y0
s = self.size
self.drawing = \
self.survive * (
eps.comment('Box', indent=indent) +
eps.newpath(indent=indent) +
eps.mt(x0, y - s, indent=indent) +
eps.lt(x0, y + s, indent=indent) +
eps.lt(x1, y + s, indent=indent) +
eps.lt(x1, y - s, indent=indent) +
eps.lt(x0, y - s, indent=indent) +
eps.closepath(indent=indent) +
eps.stroke(indent=indent)
)
self.typography = \
self.survive * (
eps.comment('Box', indent=indent) +
eps.newpath(indent=indent) +
eps.center_txt((x0+x1)/2, y, tag, font, font_normal_size, indent=indent) +
eps.stroke(indent=indent)
)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
label = self.item.name
x0 = coordinate.x0
x1 = coordinate.x1
y = coordinate.y0
hs = self.half_size
self.drawing = \
self.survive * (
eps.comment('Triangle', indent=indent) +
eps.newpath(indent=indent) +
eps.mt(x0, y - hs, indent=indent) +
eps.lt(x0, y + hs, indent=indent) +
eps.lt(x1, y, indent=indent) +
eps.lt(x0, y - hs, indent=indent) +
eps.closepath(indent=indent, colour='0 0 0') +
eps.stroke(indent=indent)
)
self.typography = \
self.survive * (
eps.comment('Triangle', indent=indent) +
eps.newpath(indent=indent) +
eps.center_txt((x0+x1)/2, y+hs+config.font_small_size, label, font, config.font_small_size, indent=indent) +
eps.stroke(indent=indent)
)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
tag = self.item.name
x0 = coordinate.x0
x1 = coordinate.x1
y = coordinate.y0
coordinate_factor = config.rack_interval * 1 / 3
self.drawing = \
self.survive * (
eps.comment('Probe', indent=indent) +
eps.newpath(indent=indent, line_width=config.ultra_bold_line, colour='1 0.4 0') +
eps.mt(x0, y, indent=indent) +
eps.lt(x1, y, indent=indent) +
#eps.closepath(indent=indent) +
eps.stroke(indent=indent)
)
self.typography = \
self.survive * (
eps.comment('Probe', indent=indent) +
eps.newpath(indent=indent, colour='0 0 0.9') +
eps.center_txt((x0+x1)/2, y-coordinate_factor, tag, font, config.font_small_size, indent=indent) +
eps.stroke(indent=indent)
)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
tag = self.item.name
x0 = coordinate.x0
x1 = coordinate.x1
y = coordinate.y0
ss = self.shaft_size
hs = self.head_size
d = 0.5 * (x1 - x0) / math.fabs(x1 - x0) # direction
self.drawing = \
self.survive * (
eps.comment('Arrow', indent=indent) +
eps.newpath(indent=indent) +
eps.mt(x0, y - ss, indent=indent) +
eps.lt(x0, y + ss, indent=indent) +
eps.lt(x1 - hs * d, y + ss, indent=indent) +
eps.lt(x1 - hs * d, y + hs, indent=indent) +
eps.lt(x1, y, indent) +
eps.lt(x1 - hs * d, y - hs, indent=indent) +
eps.lt(x1 - hs * d, y - ss, indent=indent) +
eps.lt(x0,y - ss, indent=indent) +
eps.closepath(indent=indent) +
eps.stroke(indent=indent)
)
self.typography = \
self.survive * (
eps.comment('Arrow', indent=indent) +
eps.newpath(indent=indent) +
eps.center_txt((x0+x1)/2, y, tag, font, font_normal_size, indent=indent) +
eps.stroke(indent=indent)
)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
if self.item.option == 'left':
x0 = coordinate.x0
x1 = coordinate.x1
elif self.item.option == 'center':
x0 = coordinate.x_spot[1]
x1 = coordinate.x_spot[1] + (coordinate.x1 - coordinate.x0)
else:
x0 = coordinate.x_spot[2]
x1 = coordinate.x_spot[2] + (coordinate.x1 - coordinate.x0)
y = coordinate.y0
tag = format(self.item.end, ',d') + self.item.name if config.scale_bar_comma \
else format(self.item.end, 'g') + self.item.name
coordinate_factor = config.rack_interval * 1 / 2
self.drawing = \
eps.newpath(indent=indent, line_width=config.ultra_bold_line) + \
eps.mt(x0, y-coordinate_factor, indent=indent) + \
eps.lt(x1, y-coordinate_factor, indent=indent) + \
eps.stroke(indent=indent)
self.typography = \
eps.newpath(indent=indent) + \
eps.center_txt((x0+x1)/2, y-2*coordinate_factor, tag, font, font_normal_size, indent=indent) + \
eps.stroke(indent=indent)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
self.drawing = eps.newpath(indent=indent)\
+ eps.mt(coordinate.x0, coordinate.y0, indent=indent)\
+ eps.lt(coordinate.x1, coordinate.y0 + self.item.option * config.rack_interval, indent=indent)\
+ '[1 2 3 2] 0 setdash\n'\
+ eps.stroke(indent=indent)\
+ '[] 0 setdash\n'
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
x0 = coordinate.x0
x1 = coordinate.x1
y = coordinate.y0
self.drawing = \
eps.comment('Shaft', indent=indent) + \
eps.newpath(indent=indent) + \
eps.mt(x0, y, indent=indent) + \
eps.lt(x1, y, indent=indent) + \
eps.stroke(indent=indent)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
x = coordinate.x_spot
x0 = coordinate.x0
xdiv = (coordinate.x1 - config.probe_name_length *
config.font_small_size) / (self.num_hit + 1)
txt_x = [
x0 + xdiv * (i + 1) - config.probe_name_length *
config.font_small_size / 2 #half of probe name length
for i in range(0, self.num_hit)
]
line_terminal_x = [
x0 + xdiv * (i + 1) +
config.probe_name_length * config.font_small_size *
(i / self.num_hit - 1) / 2 #half of probe name length
for i in range(0, self.num_hit)
]
y = coordinate.y0
ydiv = config.num_probes_in_one_line
unit = math.floor(self.num_hit / ydiv) + 1
height_coordinate = [
(y + config.rack_interval * self.height_probe_name) +
(i * config.font_small_size) for i in list(range(unit, 0, -1))
] * 9 #nine is repeat.
txt_y = [height_coordinate[i] for i in range(0, self.num_hit)]
line_terminal_y = [
height_coordinate[i] for i in range(0, self.num_hit)
]
self.drawing = \
eps.comment('InfMet', indent=indent) + \
eps.newpath(indent=indent, colour='1 0.4 0', line_width=config.bold_line) + \
''.join([
eps.mt(line_terminal_x[i], line_terminal_y[i], indent=indent+4) +
eps.lt(x[i], y + config.box_size, indent=indent+4) +
eps.lt(x[i], y - config.half_site_width, indent=indent+4)
for i in range(0, self.num_hit)]) + \
eps.stroke(indent=indent)
self.typography = \
eps.comment('InfMet', indent=indent) + \
eps.newpath(indent=indent, colour='0 0 0.9') + \
''.join([
eps.show_txt(txt_x[i], txt_y[i], self.hit_id[i], font, config.font_small_size, indent+4)
for i in range(0, self.num_hit)]) + \
eps.stroke(indent=indent)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
half_size = font_normal_size / 2
tag = self.item.name
x0 = coordinate.x0
y = coordinate.y0
self.drawing = \
eps.comment('Site', indent=indent) + \
eps.newpath(indent=indent) + \
''.join([eps.mt(i, y + config.half_site_width, indent=indent+4) + eps.lt(i, y - config.half_site_width, indent=indent+4) for i in coordinate.x_spot]) + \
eps.stroke(indent=indent)
self.typography = \
eps.comment('Site', indent=indent) + \
eps.newpath(indent=indent) + \
eps.right_txt(x0-half_size, y, tag, font, font_normal_size, indent=indent) + \
eps.stroke(indent=indent)
def paragraph(self, coordinate, font, font_normal_size, indent=0):
super().paragraph(coordinate, font, font_normal_size, indent=0)
tag = self.item.name
x = coordinate.x_spot
y = coordinate.y0
coordinate_factor = config.rack_interval * 1 / 3
for i in range(0, len(coordinate.x_spot), 2):
self.drawing = self.drawing + \
eps.comment('MatchingProbe', indent=indent) + \
eps.newpath(indent=indent, line_width=config.ultra_bold_line, colour='1 0.4 0') +\
eps.mt(x[i], y, indent=indent) + \
eps.lt(x[i+1], y, indent=indent) + \
eps.stroke(indent=indent)
self.typography = self.typography + \
eps.comment('MatchingProbe', indent=indent) + \
eps.newpath(indent=indent, colour='0 0 0.9') + \
eps.center_txt((x[i]+x[i+1])/2, y-coordinate_factor, tag, font, config.font_small_size, indent=indent) + \
eps.stroke(indent=indent)