Exemple #1
0
def main(args):
    with open(args.file, 'r') as csv_file:
        reader = csv.DictReader(csv_file)
        hpo_dao = HPODao()
        existing_hpo_map = {hpo.name: hpo for hpo in hpo_dao.get_all()}
        hpo_id = len(existing_hpo_map)
        with hpo_dao.session() as session:
            for row in reader:
                name = row['Organization ID']
                display_name = row['Name']
                organization_type = OrganizationType(row['Type'])
                existing_hpo = existing_hpo_map.get(name)
                if existing_hpo:
                    existing_type = existing_hpo.organizationType or OrganizationType.UNSET
                    if (existing_hpo.displayName != display_name
                            or existing_type != organization_type):
                        existing_hpo_dict = existing_hpo.asdict()
                        existing_hpo.displayName = display_name
                        existing_hpo.organizationType = organization_type
                        hpo_dao.update_with_session(session, existing_hpo)
                        logging.info('Updating HPO: old = %s, new = %s',
                                     existing_hpo_dict, existing_hpo.asdict())
                else:
                    hpo = HPO(hpoId=hpo_id,
                              name=name,
                              displayName=display_name,
                              organizationType=organization_type)
                    hpo_dao.insert_with_session(session, hpo)
                    logging.info('Inserting HPO: %s', hpo.asdict())
                    hpo_id += 1
    logging.info('Done.')
class OrganizationHierarchySyncDao(BaseDao):
    def __init__(self):
        super(OrganizationHierarchySyncDao, self).__init__(HPO)
        self.hpo_dao = HPODao()
        self.organization_dao = OrganizationDao()
        self.site_dao = SiteDao()

    def from_client_json(self,
                         resource_json,
                         id_=None,
                         expected_version=None,
                         client_id=None):  # pylint: disable=unused-argument
        try:
            fhir_org = lib_fhir.fhirclient_3_0_0.models.organization.Organization(
                resource_json)
        except FHIRValidationError:
            raise BadRequest('Invalid FHIR format in payload data.')

        if not fhir_org.meta or not fhir_org.meta.versionId:
            raise BadRequest('No versionId info found in payload data.')
        try:
            fhir_org.version = int(fhir_org.meta.versionId)
        except ValueError:
            raise BadRequest('Invalid versionId in payload data.')

        return fhir_org

    def to_client_json(self, hierarchy_org_obj):
        return hierarchy_org_obj.as_json()

    def get_etag(self, id_, pid):  # pylint: disable=unused-argument
        return None

    def update(self, hierarchy_org_obj):
        obj_type = self._get_type(hierarchy_org_obj)

        operation_funcs = {
            'AWARDEE': self._update_awardee,
            'ORGANIZATION': self._update_organization,
            'SITE': self._update_site
        }

        if obj_type not in operation_funcs:
            raise BadRequest('No awardee-type info found in payload data.')

        operation_funcs[obj_type](hierarchy_org_obj)

    def _update_awardee(self, hierarchy_org_obj):
        if hierarchy_org_obj.id is None:
            raise BadRequest('No id found in payload data.')
        awardee_id = self._get_value_from_identifier(
            hierarchy_org_obj, HIERARCHY_CONTENT_SYSTEM_PREFIX + 'awardee-id')
        if awardee_id is None:
            raise BadRequest(
                'No organization-identifier info found in payload data.')
        is_obsolete = ObsoleteStatus(
            'OBSOLETE') if not hierarchy_org_obj.active else None
        awardee_type = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'awardee-type')

        try:
            organization_type = OrganizationType(awardee_type)
            if organization_type == OrganizationType.UNSET:
                organization_type = None
        except TypeError:
            raise BadRequest(
                'Invalid organization type {} for awardee {}'.format(
                    awardee_type, awardee_id))

        entity = HPO(name=awardee_id.upper(),
                     displayName=hierarchy_org_obj.name,
                     organizationType=organization_type,
                     isObsolete=is_obsolete,
                     resourceId=hierarchy_org_obj.id)

        existing_map = {
            entity.name: entity
            for entity in self.hpo_dao.get_all()
        }
        existing_entity = existing_map.get(entity.name)

        with self.hpo_dao.session() as session:
            if existing_entity:
                hpo_id = existing_entity.hpoId
                new_dict = entity.asdict()
                new_dict['hpoId'] = None
                existing_dict = existing_entity.asdict()
                existing_dict['hpoId'] = None
                if existing_dict == new_dict:
                    logging.info('Not updating {}.'.format(new_dict['name']))
                else:
                    existing_entity.displayName = entity.displayName
                    existing_entity.organizationType = entity.organizationType
                    existing_entity.isObsolete = entity.isObsolete
                    existing_entity.resourceId = entity.resourceId
                    self.hpo_dao.update_with_session(session, existing_entity)
            else:
                entity.hpoId = len(existing_map)
                hpo_id = entity.hpoId
                self.hpo_dao.insert_with_session(session, entity)
        bq_hpo_update_by_id(hpo_id)

    def _update_organization(self, hierarchy_org_obj):
        if hierarchy_org_obj.id is None:
            raise BadRequest('No id found in payload data.')
        organization_id = self._get_value_from_identifier(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'organization-id')
        if organization_id is None:
            raise BadRequest(
                'No organization-identifier info found in payload data.')
        is_obsolete = ObsoleteStatus(
            'OBSOLETE') if not hierarchy_org_obj.active else None
        resource_id = self._get_reference(hierarchy_org_obj)

        hpo = self.hpo_dao.get_by_resource_id(resource_id)
        if hpo is None:
            raise BadRequest(
                'Invalid partOf reference {} importing organization {}'.format(
                    resource_id, organization_id))

        entity = Organization(externalId=organization_id.upper(),
                              displayName=hierarchy_org_obj.name,
                              hpoId=hpo.hpoId,
                              isObsolete=is_obsolete,
                              resourceId=hierarchy_org_obj.id)
        existing_map = {
            entity.externalId: entity
            for entity in self.organization_dao.get_all()
        }
        existing_entity = existing_map.get(entity.externalId)
        with self.organization_dao.session() as session:
            if existing_entity:
                new_dict = entity.asdict()
                new_dict['organizationId'] = None
                existing_dict = existing_entity.asdict()
                existing_dict['organizationId'] = None
                if existing_dict == new_dict:
                    logging.info('Not updating {}.'.format(
                        new_dict['externalId']))
                else:
                    existing_entity.displayName = entity.displayName
                    existing_entity.hpoId = entity.hpoId
                    existing_entity.isObsolete = entity.isObsolete
                    existing_entity.resourceId = entity.resourceId
                    self.organization_dao.update_with_session(
                        session, existing_entity)
            else:
                self.organization_dao.insert_with_session(session, entity)
        org_id = self.organization_dao.get_by_external_id(
            organization_id.upper()).organizationId
        bq_organization_update_by_id(org_id)

    def _update_site(self, hierarchy_org_obj):
        if hierarchy_org_obj.id is None:
            raise BadRequest('No id found in payload data.')
        google_group = self._get_value_from_identifier(
            hierarchy_org_obj, HIERARCHY_CONTENT_SYSTEM_PREFIX + 'site-id')
        if google_group is None:
            raise BadRequest(
                'No organization-identifier info found in payload data.')
        google_group = google_group.lower()
        is_obsolete = ObsoleteStatus(
            'OBSOLETE') if not hierarchy_org_obj.active else None
        resource_id = self._get_reference(hierarchy_org_obj)

        organization = self.organization_dao.get_by_resource_id(resource_id)
        if organization is None:
            raise BadRequest(
                'Invalid partOf reference {} importing site {}'.format(
                    resource_id, google_group))

        launch_date = None
        launch_date_str = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'anticipatedLaunchDate',
            'valueDate')
        if launch_date_str:
            try:
                launch_date = parse(launch_date_str).date()
            except ValueError:
                raise BadRequest('Invalid launch date {} for site {}'.format(
                    launch_date_str, google_group))

        name = hierarchy_org_obj.name
        mayolink_client_number = None
        mayolink_client_number_str = self._get_value_from_identifier(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'mayo-link-identifier')
        if mayolink_client_number_str:
            try:
                mayolink_client_number = int(mayolink_client_number_str)
            except ValueError:
                raise BadRequest(
                    'Invalid Mayolink Client # {} for site {}'.format(
                        mayolink_client_number_str, google_group))

        notes = self._get_value_from_extention(
            hierarchy_org_obj, HIERARCHY_CONTENT_SYSTEM_PREFIX + 'notes')

        site_status_bool = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'schedulingStatusActive',
            'valueBoolean')
        try:
            site_status = SiteStatus(
                'ACTIVE' if site_status_bool else 'INACTIVE')
        except TypeError:
            raise BadRequest('Invalid site status {} for site {}'.format(
                site_status, google_group))

        enrolling_status_bool = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'enrollmentStatusActive',
            'valueBoolean')
        try:
            enrolling_status = EnrollingStatus(
                'ACTIVE' if enrolling_status_bool else 'INACTIVE')
        except TypeError:
            raise BadRequest(
                'Invalid enrollment site status {} for site {}'.format(
                    enrolling_status_bool, google_group))

        digital_scheduling_bool = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'digitalSchedulingStatusActive',
            'valueBoolean')
        try:
            digital_scheduling_status = DigitalSchedulingStatus(
                'ACTIVE' if digital_scheduling_bool else 'INACTIVE')
        except TypeError:
            raise BadRequest(
                'Invalid digital scheduling status {} for site {}'.format(
                    digital_scheduling_bool, google_group))

        directions = self._get_value_from_extention(
            hierarchy_org_obj, HIERARCHY_CONTENT_SYSTEM_PREFIX + 'directions')
        physical_location_name = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'locationName')
        address_1, address_2, city, state, zip_code = self._get_address(
            hierarchy_org_obj)

        phone = self._get_contact_point(hierarchy_org_obj, 'phone')
        admin_email_addresses = self._get_contact_point(
            hierarchy_org_obj, 'email')
        link = self._get_contact_point(hierarchy_org_obj, 'url')

        schedule_instructions = self._get_value_from_extention(
            hierarchy_org_obj,
            HIERARCHY_CONTENT_SYSTEM_PREFIX + 'schedulingInstructions')

        entity = Site(siteName=name,
                      googleGroup=google_group,
                      mayolinkClientNumber=mayolink_client_number,
                      organizationId=organization.organizationId,
                      hpoId=organization.hpoId,
                      siteStatus=site_status,
                      enrollingStatus=enrolling_status,
                      digitalSchedulingStatus=digital_scheduling_status,
                      scheduleInstructions=schedule_instructions,
                      scheduleInstructions_ES='',
                      launchDate=launch_date,
                      notes=notes,
                      notes_ES='',
                      directions=directions,
                      physicalLocationName=physical_location_name,
                      address1=address_1,
                      address2=address_2,
                      city=city,
                      state=state,
                      zipCode=zip_code,
                      phoneNumber=phone,
                      adminEmails=admin_email_addresses,
                      link=link,
                      isObsolete=is_obsolete,
                      resourceId=hierarchy_org_obj.id)

        existing_map = {
            entity.googleGroup: entity
            for entity in self.site_dao.get_all()
        }

        existing_entity = existing_map.get(entity.googleGroup)
        with self.site_dao.session() as session:
            if existing_entity:
                self._populate_lat_lng_and_time_zone(entity, existing_entity)
                if entity.siteStatus == SiteStatus.ACTIVE and \
                  (entity.latitude is None or entity.longitude is None):
                    raise BadRequest(
                        'Active site without geocoding: {}'.format(
                            entity.googleGroup))

                new_dict = entity.asdict()
                new_dict['siteId'] = None
                existing_dict = existing_entity.asdict()
                existing_dict['siteId'] = None
                if existing_dict == new_dict:
                    logging.info('Not updating {}.'.format(
                        new_dict['googleGroup']))
                else:
                    for k, v in entity.asdict().iteritems():
                        if k != 'siteId' and k != 'googleGroup':
                            setattr(existing_entity, k, v)
                    self.site_dao.update_with_session(session, existing_entity)
            else:
                self._populate_lat_lng_and_time_zone(entity, None)
                if entity.siteStatus == SiteStatus.ACTIVE and \
                  (entity.latitude is None or entity.longitude is None):
                    raise BadRequest(
                        'Active site without geocoding: {}'.format(
                            entity.googleGroup))
                self.site_dao.insert_with_session(session, entity)
        site_id = self.site_dao.get_by_google_group(google_group).siteId
        bq_site_update_by_id(site_id)

    def _get_type(self, hierarchy_org_obj):
        obj_type = None
        type_arr = hierarchy_org_obj.type
        for type_item in type_arr:
            code_arr = type_item.coding
            for code_item in code_arr:
                if code_item.system == HIERARCHY_CONTENT_SYSTEM_PREFIX + 'type':
                    obj_type = code_item.code
                    break

        return obj_type

    def _get_value_from_identifier(self, hierarchy_org_obj, system):
        identifier_arr = hierarchy_org_obj.identifier
        for identifier in identifier_arr:
            if identifier.system == system:
                return identifier.value
        else:
            return None

    def _get_value_from_extention(self,
                                  hierarchy_org_obj,
                                  url,
                                  value_key='valueString'):
        extension_arr = hierarchy_org_obj.extension
        for extension in extension_arr:
            if extension.url == url:
                ext_json = extension.as_json()
                return ext_json[value_key]
        else:
            return None

    def _get_contact_point(self, hierarchy_org_obj, code):
        contact_arr = hierarchy_org_obj.contact
        for contact in contact_arr:
            telecom_arr = contact.telecom
            for telecom in telecom_arr:
                if telecom.system == code:
                    return telecom.value
        else:
            return None

    def _get_address(self, hierarchy_org_obj):
        address = hierarchy_org_obj.address[0]
        address_1 = address.line[0] if len(address.line) > 0 else ''
        address_2 = address.line[1] if len(address.line) > 1 else ''
        city = address.city
        state = address.state
        postal_code = address.postalCode

        return address_1, address_2, city, state, postal_code

    def _get_reference(self, hierarchy_org_obj):
        try:
            return hierarchy_org_obj.partOf.reference.split('/')[1]
        except IndexError:
            return None

    def _populate_lat_lng_and_time_zone(self, site, existing_site):
        if site.address1 and site.city and site.state:
            if existing_site:
                if (existing_site.address1 == site.address1
                        and existing_site.city == site.city
                        and existing_site.state == site.state
                        and existing_site.latitude is not None
                        and existing_site.longitude is not None
                        and existing_site.timeZoneId is not None):
                    # Address didn't change, use the existing lat/lng and time zone.
                    site.latitude = existing_site.latitude
                    site.longitude = existing_site.longitude
                    site.timeZoneId = existing_site.timeZoneId
                    return
            latitude, longitude = self._get_lat_long_for_site(
                site.address1, site.city, site.state)
            site.latitude = latitude
            site.longitude = longitude
            if latitude and longitude:
                site.timeZoneId = self._get_time_zone(latitude, longitude)
        else:
            if site.googleGroup not in self.status_exception_list:
                if site.siteStatus == self.ACTIVE:
                    logging.warn(
                        'Active site must have valid address. Site: {}, Group: {}'
                        .format(site.siteName, site.googleGroup))

    def _get_lat_long_for_site(self, address_1, city, state):
        self.full_address = address_1 + ' ' + city + ' ' + state
        try:
            self.api_key = os.environ.get('API_KEY')
            self.gmaps = googlemaps.Client(key=self.api_key)
            try:
                geocode_result = self.gmaps.geocode(address_1 + '' + city +
                                                    ' ' + state)[0]
            except IndexError:
                logging.warn('Bad address for {}, could not geocode.'.format(
                    self.full_address))
                return None, None
            if geocode_result:
                geometry = geocode_result.get('geometry')
                if geometry:
                    location = geometry.get('location')
                if location:
                    latitude = location.get('lat')
                    longitude = location.get('lng')
                    return latitude, longitude
                else:
                    logging.warn('Can not find lat/long for %s',
                                 self.full_address)
                    return None, None
            else:
                logging.warn('Geocode results failed for %s.',
                             self.full_address)
                return None, None
        except ValueError as e:
            logging.exception('Invalid geocode key: %s. ERROR: %s',
                              self.api_key, e)
            return None, None
        except IndexError as e:
            logging.exception(
                'Geocoding failure Check that address is correct. ERROR: %s',
                e)
            return None, None

    def _get_time_zone(self, latitude, longitude):
        time_zone = self.gmaps.timezone(location=(latitude, longitude))
        if time_zone['status'] == 'OK':
            time_zone_id = time_zone['timeZoneId']
            return time_zone_id
        else:
            logging.info('can not retrieve time zone from %s',
                         self.full_address)
            return None