def __init__(self, _files, readClass=DNARead):
self._files = _files if isinstance(_files, (list, tuple)) else [_files]
self.readClass = readClass
if PY3:
super().__init__()
else:
Reads.__init__(self)
def __init__(self, _files, readClass=SSAARead, upperCase=False):
self._files = _files if isinstance(_files, (list, tuple)) else [_files]
self._readClass = readClass
self._upperCase = upperCase
if PY3:
super().__init__()
else:
Reads.__init__(self)
def __init__(self, _files, readClass=SSAARead, upperCase=False):
self._files = _files if isinstance(_files, (list, tuple)) else [_files]
self._readClass = readClass
self._upperCase = upperCase
if PY3:
super().__init__()
else:
Reads.__init__(self)
def __init__(self, _file, readClass=DNARead, checkAlphabet=None,
upperCase=False):
self._file = _file
self._readClass = readClass
self._checkAlphabet = checkAlphabet
# TODO: It would be better if upperCase were an argument that could
# be passed to Reads.__init__ and that could do the uppercasing in
# its add method (as opposed to using it below in our iter method).
# In that case, in the iter of this class we'd call self.add on
# each of the sequences coming from self._file. Or, if we'd already
# read the file we'd return Reads.iter(self) to re-iterate over the
# sequences already added from the file.
self._upperCase = upperCase
Reads.__init__(self)
def __init__(self, _files, readClass=DNARead, upperCase=False):
self._files = _files if isinstance(_files, (list, tuple)) else [_files]
self._readClass = readClass
# TODO: It would be better if upperCase were an argument that could
# be passed to Reads.__init__ and that could do the uppercasing in
# its add method (as opposed to using it below in our iter method).
# In that case, in the iter of this class we'd call self.add on
# each of the sequences coming from self._file. Or, if we'd already
# read the file we'd return Reads.iter(self) to re-iterate over the
# sequences already added from the file.
self._upperCase = upperCase
if PY3:
super().__init__()
else:
Reads.__init__(self)
def __init__(self, _files, readClass=DNARead, upperCase=False):
self._files = _files if isinstance(_files, (list, tuple)) else [_files]
self._readClass = readClass
# TODO: It would be better if upperCase were an argument that could
# be passed to Reads.__init__ and that could do the uppercasing in
# its add method (as opposed to using it below in our iter method).
# In that case, in the iter of this class we'd call self.add on
# each of the sequences coming from self._file. Or, if we'd already
# read the file we'd return Reads.iter(self) to re-iterate over the
# sequences already added from the file.
self._upperCase = upperCase
if PY3:
super().__init__()
else:
Reads.__init__(self)
def __init__(self, filename):
self.filename = filename
Reads.__init__(self)
def __init__(self, file_, readClass=DNARead):
self.file_ = file_
self.readClass = readClass
Reads.__init__(self)
